3300000180: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 500m

Overview

Basic Information

• IMG/M Taxon OID: 3300000180
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053615 | Ga0026206
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 500m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17151026
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Alt. (m): N/A
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F014276	Metagenome / Metatranscriptome	264	Y
F057445	Metagenome / Metatranscriptome	136	N
F061920	Metagenome / Metatranscriptome	131	Y
F081452	Metagenome / Metatranscriptome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
LPaug08P26500mDRAFT_c100267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	2293
LPaug08P26500mDRAFT_c101895	Not Available	974
LPaug08P26500mDRAFT_c103197	All Organisms → cellular organisms → Bacteria → Proteobacteria	761
LPaug08P26500mDRAFT_c104288	Not Available	664
LPaug08P26500mDRAFT_c104351	Not Available	661

Sequences

Scaffold ID	Protein ID	Family	Sequence
LPaug08P26500mDRAFT_c100267	LPaug08P26500mDRAFT_1002673	F081452	RCRTLADSHLLSRLFMIPVLSPAQVAREDGLIFNTSRTFKDPTNFNIIISDKVA*
LPaug08P26500mDRAFT_c101895	LPaug08P26500mDRAFT_1018953	F061920	VNYLNKNGRRFLDKTPFANFIKPEKSDKSCHYEKQESIRDGLTKRLIAEEASRKNVS*
LPaug08P26500mDRAFT_c103197	LPaug08P26500mDRAFT_1031972	F057445	LGKAAVNEILPKAVSLILIKERLENKRKKDFLDLSDLFSVAPDVIKIM*
LPaug08P26500mDRAFT_c104288	LPaug08P26500mDRAFT_1042883	F006364	MEVELDNDTRKMRIINYLDYMDDKSLQEIAAALYNLSKRRQEISNKKELVDESGK*
LPaug08P26500mDRAFT_c104351	LPaug08P26500mDRAFT_1043512	F014276	MIHKVSELCKKINGIKVISDRLYETKYNKTKSPERDAEVDNMIVDIQSQCKLVA