3300000131: Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 02_11.3m

Overview

Basic Information

• IMG/M Taxon OID: 3300000131
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063447 | Gp0053463 | Ga0026513
• Sample Name: Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 02_11.3m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57529379
• Sequencing Scaffolds: 24
• Novel Protein Genes: 27
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: MC site, Ushuaia Bay, Tierra del Fuego, Argentina
• Coordinates
  • Lat. (^o): -54.810872
  • Long. (^o): -68.295525
  • Alt. (m): N/A
  • Depth (m): 11.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F005967	Metagenome / Metatranscriptome	385	Y
F008223	Metagenome / Metatranscriptome	337	Y
F008577	Metagenome / Metatranscriptome	331	Y
F008695	Metagenome / Metatranscriptome	329	Y
F010570	Metagenome / Metatranscriptome	302	Y
F011006	Metagenome / Metatranscriptome	296	Y
F011526	Metagenome / Metatranscriptome	290	Y
F013571	Metagenome / Metatranscriptome	270	Y
F014037	Metagenome / Metatranscriptome	266	Y
F016664	Metagenome / Metatranscriptome	245	Y
F019630	Metagenome / Metatranscriptome	228	N
F037230	Metagenome / Metatranscriptome	168	Y
F037736	Metagenome / Metatranscriptome	167	Y
F045851	Metagenome / Metatranscriptome	152	Y
F047684	Metagenome / Metatranscriptome	149	Y
F049942	Metagenome / Metatranscriptome	146	N
F051139	Metagenome / Metatranscriptome	144	Y
F058909	Metagenome / Metatranscriptome	134	Y
F061284	Metagenome	132	N
F062773	Metagenome / Metatranscriptome	130	Y
F085730	Metagenome / Metatranscriptome	111	N
F099205	Metagenome	103	N
F100687	Metagenome	102	N
F103277	Metagenome	101	Y
F105899	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
TDF_MC_ARG02_113mDRAFT_c1000225	Not Available	5210
TDF_MC_ARG02_113mDRAFT_c1002110	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1616
TDF_MC_ARG02_113mDRAFT_c1002750	All Organisms → Viruses → Predicted Viral	1389
TDF_MC_ARG02_113mDRAFT_c1002752	All Organisms → Viruses → Predicted Viral	1388
TDF_MC_ARG02_113mDRAFT_c1002854	All Organisms → cellular organisms → Bacteria → Proteobacteria	1363
TDF_MC_ARG02_113mDRAFT_c1003048	Not Available	1312
TDF_MC_ARG02_113mDRAFT_c1003837	Not Available	1155
TDF_MC_ARG02_113mDRAFT_c1004075	All Organisms → Viruses → Predicted Viral	1116
TDF_MC_ARG02_113mDRAFT_c1004220	All Organisms → Viruses → environmental samples → uncultured marine virus	1093
TDF_MC_ARG02_113mDRAFT_c1004495	All Organisms → Viruses → Predicted Viral	1058
TDF_MC_ARG02_113mDRAFT_c1005208	Not Available	975
TDF_MC_ARG02_113mDRAFT_c1006338	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	876
TDF_MC_ARG02_113mDRAFT_c1006917	Not Available	842
TDF_MC_ARG02_113mDRAFT_c1007464	Not Available	809
TDF_MC_ARG02_113mDRAFT_c1008726	Not Available	750
TDF_MC_ARG02_113mDRAFT_c1010937	All Organisms → Viruses	671
TDF_MC_ARG02_113mDRAFT_c1012721	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	625
TDF_MC_ARG02_113mDRAFT_c1013928	Not Available	599
TDF_MC_ARG02_113mDRAFT_c1014161	Not Available	594
TDF_MC_ARG02_113mDRAFT_c1016153	Not Available	560
TDF_MC_ARG02_113mDRAFT_c1016907	Not Available	548
TDF_MC_ARG02_113mDRAFT_c1017041	Not Available	546
TDF_MC_ARG02_113mDRAFT_c1018485	Not Available	526
TDF_MC_ARG02_113mDRAFT_c1020588	All Organisms → cellular organisms → Bacteria	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
TDF_MC_ARG02_113mDRAFT_c1000225	TDF_MC_ARG02_113mDRAFT_10002258	F085730	MNNEQKNWHNEIIDRLVDHKGMDQDDFHDVLHDELDNMVIYNSESQKIVDDLNYDVFQENDLFGRANNINQAAYAALYELFYEEGSFTYEDYLNYEKA*
TDF_MC_ARG02_113mDRAFT_c1002110	TDF_MC_ARG02_113mDRAFT_10021105	F058909	MIDLSNTEINVLMVALDHMEEEISDLMSERTLRGNMWKERLDACESIRNKIKQLC*
TDF_MC_ARG02_113mDRAFT_c1002750	TDF_MC_ARG02_113mDRAFT_10027501	F010570	MKTFRKYSFGSKGAATTKINALGTITDAEGNEMPSHPHAIVHLGNLVEVAGTYDEEGNELTAPVMSSSYHIDVLWEGEAVASWDSAMVWCPPMGLHTFGSSSAIAEWTEACKA
TDF_MC_ARG02_113mDRAFT_c1002752	TDF_MC_ARG02_113mDRAFT_10027526	F008577	MKLTWEEIKSIANRLDEIIGDNFHDAMWNTVSERDIDYNFEVSDEDILQIKEQ
TDF_MC_ARG02_113mDRAFT_c1002854	TDF_MC_ARG02_113mDRAFT_10028543	F016664	TNNELDHIVEIIVHINENLGEQQRADLIIALEGDDGITAAEFCPLRCHLMLVRYDKDRYSSQHVLSAVGAQKLQARLIGSI*
TDF_MC_ARG02_113mDRAFT_c1003048	TDF_MC_ARG02_113mDRAFT_10030481	F019630	MPKIKKKIVLKNCNYKHQQYCFKKGFIIYPVVSGNMFKVYCNRIKGNYYMKGKEFNKQESFQAIWHLYTKIYNYEFNKVRG*
TDF_MC_ARG02_113mDRAFT_c1003837	TDF_MC_ARG02_113mDRAFT_10038373	F037230	MKNLTEKYVNIDWNGICEGFDLGSGDISPEQSFEVDRALTSINKVLNGFIEQNKPTVMLGNATLTNSEHNVLMVSLDHMYEHLSDMRGDFDGDEDNEIDNLKRMTDVRSLQKLFKR*
TDF_MC_ARG02_113mDRAFT_c1004075	TDF_MC_ARG02_113mDRAFT_10040751	F099205	MIIDLKVRNQIAQLIVDMSVGESKPVRRPEMVPIIKEVNDTALIGHALRFVTN
TDF_MC_ARG02_113mDRAFT_c1004075	TDF_MC_ARG02_113mDRAFT_10040752	F061284	MTHDQAKKHEERAFDYLLKRYGWQIFTTPHFALIDGVAVKDNEITHVVEFKSRNESLSSMERFGTYLISNDKIMNGMEMARMMCVPFILIVCLIKDGTIIAVEIGDQFGLNDIGIEVKPTQTQRSMEGGKVIRNNAFIDIDKFHIL*
TDF_MC_ARG02_113mDRAFT_c1004220	TDF_MC_ARG02_113mDRAFT_10042205	F100687	MDTKLKNIIKIIQPEFESEDSWYNEQLPNEVSLYLDTDDCLIDLHLKDDVLQTNIWIEDEEYNLTDEDANFVYEHLNKLLDNEIELTKRYYNEEKYEQNRF*
TDF_MC_ARG02_113mDRAFT_c1004495	TDF_MC_ARG02_113mDRAFT_10044951	F008695	MISVKRTLNKHLIKTSNMERVDKVEHIWSGKEDRWIYIEYNEQRKIIGLNFMQGDDYEYFKKSWCHTDPGLTEFYESMLYTFPIEKASV
TDF_MC_ARG02_113mDRAFT_c1004495	TDF_MC_ARG02_113mDRAFT_10044953	F008577	VKLTWEEIKDIANRLDEIIGDNFHDAMWNTVSERDIDYNFEVSDEDILQIKEQLKRIL*
TDF_MC_ARG02_113mDRAFT_c1005208	TDF_MC_ARG02_113mDRAFT_10052081	F047684	GFFSMHADVWSVVSEHINEGYEKAVYVHDITEICKRFRINGKAVKRDGFEELYVKLYGDGAFAKLLMGFEKEIENEYYKTTEYTPIKIK*
TDF_MC_ARG02_113mDRAFT_c1006338	TDF_MC_ARG02_113mDRAFT_10063381	F037736	VPYRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLIGAADVNHIWWLNTNRFAGLLLHLNSYRIRHLPFGFLTASEFQSKVLA*
TDF_MC_ARG02_113mDRAFT_c1006917	TDF_MC_ARG02_113mDRAFT_10069171	F014037	IYGLAQGDITRYENITKLNVHECFMMLSFMKDKAEVEAKRIKQNFK*
TDF_MC_ARG02_113mDRAFT_c1007464	TDF_MC_ARG02_113mDRAFT_10074641	F103277	MDKQALQAKVDELELTLNSLELNTQTTKNDLMQATKKLEDVSKPIITEEIVEQIRNAVNQAVGQLSFNNPEEYDVDFEIDYNNSLALASIEFNGTDEMEE
TDF_MC_ARG02_113mDRAFT_c1008726	TDF_MC_ARG02_113mDRAFT_10087263	F011006	MKKLINRXLVKRSIRPYKVVPLSTGVIVEHYRNGKLKTEYYGLV*
TDF_MC_ARG02_113mDRAFT_c1010937	TDF_MC_ARG02_113mDRAFT_10109373	F062773	MGLGAAIGNGIPFQDKRNEDIPELCFIITELDEFCEQELVIGDSRMTPE
TDF_MC_ARG02_113mDRAFT_c1012721	TDF_MC_ARG02_113mDRAFT_10127212	F049942	MDIDYLNDLDRGDFDCREGYPHKEGQSNAYDIGYGARYVLEQMQSAGEIK*
TDF_MC_ARG02_113mDRAFT_c1013928	TDF_MC_ARG02_113mDRAFT_10139281	F008223	MDIFKKLFAKKDPAPTAIEAACRIIDRFATATSSSIDREDLARYPARQFKVMAFHYGAIEYLSHQLGLDETQMLGVFVVFMKTYFSMPITETGSISERLQGFRDKPDERRFFEAGLD
TDF_MC_ARG02_113mDRAFT_c1014161	TDF_MC_ARG02_113mDRAFT_10141611	F005967	MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGASAATIGEKEMTVTTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDSDFKDW
TDF_MC_ARG02_113mDRAFT_c1015185	TDF_MC_ARG02_113mDRAFT_10151851	F105899	NFGAKWGWYSSIYGLAGGDVRKFEDITKLNIHQCFTFLSFTKEKAEIEAQQIKSKF*
TDF_MC_ARG02_113mDRAFT_c1016153	TDF_MC_ARG02_113mDRAFT_10161532	F000751	GKDYLLNLGVIVEQEGEIVFAKNTAAVVYIGKVVKIPATYDDEGNIITPAVYYDGFAIDVMSSEILDFGTYEVFPADKAAHSFYGWAVSAEVPPIDGEEIPTKKK*
TDF_MC_ARG02_113mDRAFT_c1016907	TDF_MC_ARG02_113mDRAFT_10169072	F051139	MQKAKLKLPVKQFHQLHDFLGEVLDYYGQENSDFNMENSEIELIEDIRHELFNQIPDEKPIETTYAFTAVANLTSITTIKLYEINRVETGGFLITNDRGSEIFCIDKGCSHLSSDQSK
TDF_MC_ARG02_113mDRAFT_c1017041	TDF_MC_ARG02_113mDRAFT_10170413	F045851	MTLQDHNTITELIKFYQKNRSEADYKKGIQPIHGHKIESLMMSNYIQGRKLD
TDF_MC_ARG02_113mDRAFT_c1018485	TDF_MC_ARG02_113mDRAFT_10184851	F013571	MLLVPNAMMLGWQYHEPEKGFEYSELNLFLFFGQIQVRWE*
TDF_MC_ARG02_113mDRAFT_c1020588	TDF_MC_ARG02_113mDRAFT_10205881	F011526	MSNEQMIAVVECFIHHRTNKQVRISLPSKPQHFLLLTKAYENSLPYFIK*