3300000123: Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S2 sample ANT 06_23.45m

Overview

Basic Information

• IMG/M Taxon OID: 3300000123
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063447 | Gp0053477 | Ga0026505
• Sample Name: Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S2 sample ANT 06_23.45m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 87052102
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Poseidonocella → unclassified Poseidonocella → Poseidonocella sp. HB161398	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: S2 site, Potter Cove, King George Island, Antarctic Peninsula
• Coordinates
  • Lat. (^o): -62.231932
  • Long. (^o): -58.655087
  • Alt. (m): N/A
  • Depth (m): 23.45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016209	Metagenome	249	Y
F050639	Metagenome / Metatranscriptome	145	Y
F057384	Metagenome / Metatranscriptome	136	Y
F073087	Metagenome	120	Y
F079616	Metagenome	115	Y
F084255	Metagenome / Metatranscriptome	112	Y
F093886	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
KGI_S2_ANT06_2345mDRAFT_c1004755	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4469
KGI_S2_ANT06_2345mDRAFT_c1006718	All Organisms → cellular organisms → Bacteria → Proteobacteria	3627
KGI_S2_ANT06_2345mDRAFT_c1009690	All Organisms → cellular organisms → Bacteria → Proteobacteria	2895
KGI_S2_ANT06_2345mDRAFT_c1010139	All Organisms → cellular organisms → Bacteria	2813
KGI_S2_ANT06_2345mDRAFT_c1011877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2555
KGI_S2_ANT06_2345mDRAFT_c1013246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Poseidonocella → unclassified Poseidonocella → Poseidonocella sp. HB161398	2399
KGI_S2_ANT06_2345mDRAFT_c1016789	Not Available	2098
KGI_S2_ANT06_2345mDRAFT_c1017369	Not Available	2060

Sequences

Scaffold ID	Protein ID	Family	Sequence
KGI_S2_ANT06_2345mDRAFT_c1004755	KGI_S2_ANT06_2345mDRAFT_10047553	F079616	MAFFNEIGLSIKMENRFKIGEVVVCINAMRRWYRLGGLQENEMYTVTGFNPYDGGLILKEVKSPTSAYHAFASNRFRKVDYNFAEKLLEEFQTQILQETQLKEQF*
KGI_S2_ANT06_2345mDRAFT_c1006718	KGI_S2_ANT06_2345mDRAFT_10067182	F057384	MIHKRMDEASIDTALDAYLHGAKEGDFKQAQQLHEMLDFMLTEREIPDGQLWLTEHGKLLLADMHRQLSHCEGDTDQLRDTVLEAVQLKPNQGKWKDTCSYVRDLKIAITVANELCEQRGAGRNPDITEAAKAVADSGEFGLDTSRICEVYDEIASTVGGFREFSRC*
KGI_S2_ANT06_2345mDRAFT_c1009690	KGI_S2_ANT06_2345mDRAFT_10096903	F073087	MNTQTSFTKAIIVSTQRLFRSNKNHSLLATNCIDACTARDIGFNPVGQF*
KGI_S2_ANT06_2345mDRAFT_c1010139	KGI_S2_ANT06_2345mDRAFT_10101392	F084255	MESSKRYLLQAEIEYWHEMLYLNKSRMPKNKEVEMRDCLKKAVRAMNTNSIGDFRAAA*
KGI_S2_ANT06_2345mDRAFT_c1011877	KGI_S2_ANT06_2345mDRAFT_10118774	F093886	MNYWILIPIPIFLLIAAADIKAHNLVTVNSNARVHQHVYRRQQYGTPLQQGHLNRAPGGSSMITWRTGTRSDYGKLNARRDGPIIGDQRRKAGEIPKHTKKYGSAVKAYGKPRRDY*
KGI_S2_ANT06_2345mDRAFT_c1013246	KGI_S2_ANT06_2345mDRAFT_10132464	F073087	MNTQHQTSFSKAVLGSAQRLFRFNKNNNLLANSFIDARTMRDIGIKPFDQF*
KGI_S2_ANT06_2345mDRAFT_c1016789	KGI_S2_ANT06_2345mDRAFT_10167891	F016209	FYSKFMGYQLDNKKVKAEEWYLKPQYLATGINTYDRMSGNFNNDLSNNNRSVIVIGTELQIHRKFEEMLKTYGWQLQDSWNRELKPEYLEYYKENNNTPIIINLK*
KGI_S2_ANT06_2345mDRAFT_c1017369	KGI_S2_ANT06_2345mDRAFT_10173692	F050639	MLRWMWRELETGLRNTLNGHEEGNLGYSQGYSLRVTAPVLDPTCESLAGRFRRATRP