3300000114: Passalidae beetle gut microbial communities from Costa Rica -Larvae (3ML+3BL)

Overview

Basic Information

• IMG/M Taxon OID: 3300000114
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0050939 | Gp0054014 | Ga0026078
• Sample Name: Passalidae beetle gut microbial communities from Costa Rica -Larvae (3ML+3BL)
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 804003313
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Passalidae Beetle Gut Microbial Communities From Costa Rica
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut → Passalidae Beetle Gut Microbial Communities From Costa Rica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Quebrada Gonzales Sector, Braulio Carrillo National Park, Costa Rica
• Coordinates
  • Lat. (^o): 10.207151
  • Long. (^o): -84.007673
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001800	Metagenome / Metatranscriptome	632	Y
F066905	Metagenome	126	Y
F096286	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
IMNBL3_c10000003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	215358
IMNBL3_c10000586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	36212
IMNBL3_c10166996	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	793
IMNBL3_c10167257	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	792

Sequences

Scaffold ID	Protein ID	Family	Sequence
IMNBL3_c10000003	IMNBL3_10000003202	F066905	MQEDRNCGCSCNNGGILNGMFGCGGDTEILFFIIIFLLLFTNFGCGCGRG*
IMNBL3_c10000586	IMNBL3_100005865	F066905	MQEEVRGLGSCGCNNGCNNGILGGLFNGCGSNSTVLFFIIIFLLLFTDFGCGCNR*
IMNBL3_c10166996	IMNBL3_101669961	F001800	MKSIFRKMAALLSMLLAAALLTAPAVAQSGANHANNWRDEDEQLAQIAELEQLHATFHAAVSVHDPVNGDSPTVITQRIRDALSIWAKDAQLTIVNTTATAGNYIGNGDPDDPANCPPPSGDTSATGQQGTLCTFFKYVSGGLQAANKFVSLSPAFKTKFVPVKDDDGQWKSSVYFECHYFDVSLNPATGQPFWTAKSHVSLDGEAKKIDGRWLLTHA
IMNBL3_c10167257	IMNBL3_101672572	F096286	ALFDYSVKGKKVDHIRFSQAERSVVYVTVVFADRTEWSISIEPFSLPTARVSHFISIEEDPIAESGQMFLPDHPDSHPQYEEIQQPPKQRKPRKRSKK*