3300000084: Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C

Overview

Basic Information

• IMG/M Taxon OID: 3300000084
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0060837 | Gp0052109 | Ga0026016
• Sample Name: Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56055567
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Great Boiling Spring, Nevada
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Great Boiling Spring, Nevada
• Coordinates
  • Lat. (^o): 40.67
  • Long. (^o): -119.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089858	Metagenome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
GBSCSSed85CDRAFT_c006205	All Organisms → cellular organisms → Archaea	1611
GBSCSSed85CDRAFT_c007562	All Organisms → cellular organisms → Archaea	1319
GBSCSSed85CDRAFT_c008139	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1224
GBSCSSed85CDRAFT_c008525	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1170
GBSCSSed85CDRAFT_c013225	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	729
GBSCSSed85CDRAFT_c013497	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	714

Sequences

Scaffold ID	Protein ID	Family	Sequence
GBSCSSed85CDRAFT_c006205	GBSCSSed85CDRAFT_0062055	F089858	MEWVEYLARLRFHVNGFYPEKLTREYVEREVRRKLSIPELEEEGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLEDPDDPKITCAEVQVVREDLEEETIKAKGVKYVIIGDIQDMGRARFVRIREGVREVEEE*
GBSCSSed85CDRAFT_c007562	GBSCSSed85CDRAFT_0075622	F089858	MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSIPELEEEGLMEIIVSEVGVDGLLNIPVKHGELWVEELEDGRFAINLDDPDDPKITCAEVQVVHEDLEEETIKAKDVKCVIIGDIPDMGRARFVRIREGVREVEEGE*
GBSCSSed85CDRAFT_c008139	GBSCSSed85CDRAFT_0081391	F089858	TKEYVEREIRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND*
GBSCSSed85CDRAFT_c008525	GBSCSSed85CDRAFT_0085252	F089858	MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSIPELEEEGLMEIIVSEVGVDGLLNIPVKHGELWVRELEDGRFAINLDDPDDPKITCVEVQVVHEDLEEETIKAKGVKYVILGDIPGMGRARFVRIREGVREVEEGE*
GBSCSSed85CDRAFT_c013225	GBSCSSed85CDRAFT_0132251	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCAEVQMVREDLEEETIKAKDVKCVIIGDIPDMGRARFVRIREGVREVEEE*
GBSCSSed85CDRAFT_c013497	GBSCSSed85CDRAFT_0134972	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPELEEEDLMEIIVSETGVDGLLNIPVKRGELWVRELEDGRFAINLDDPKITCVEVQVVREDLEEETIKAKGVKYVIIGDVPDTWGRLDS*