3300000079: Sheep rumen microbial communities from New Zealand - High methane

Overview

Basic Information

• IMG/M Taxon OID: 3300000079
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0070997 | Gp0054623 | Ga0010834
• Sample Name: Sheep rumen microbial communities from New Zealand - High methane
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 160232843
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera subtropica	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004268	Metagenome / Metatranscriptome	446	Y
F013263	Metagenome	272	Y
F019573	Metagenome / Metatranscriptome	229	Y
F026764	Metagenome / Metatranscriptome	196	Y
F037527	Metagenome / Metatranscriptome	167	Y
F048664	Metagenome / Metatranscriptome	148	N
F050059	Metagenome / Metatranscriptome	145	Y
F057038	Metagenome / Metatranscriptome	136	Y
F067318	Metagenome / Metatranscriptome	125	Y
F077961	Metagenome / Metatranscriptome	117	N
F091029	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
HighMDraftT1_c068662	Not Available	570
HighMDraftT1_c101808	All Organisms → cellular organisms → Bacteria	729
HighMDraftT1_c119040	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	666
HighMDraftT1_c145377	Not Available	522
HighMDraftT1_c152293	Not Available	523
HighMDraftT1_c171935	Not Available	617
HighMDraftT1_c174202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera subtropica	998
HighMDraftT1_c176698	Not Available	547
HighMDraftT1_c183404	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum	653

Sequences

Scaffold ID	Protein ID	Family	Sequence
HighMDraftT1_c068662	HighMDraftT1_0686621	F013263	LRNQEKAIKARIDEISTEATNEAVAILAEKGLEKGEFEVESVGKFQLQRTEVFDFADYHKYQQEQAVKWRENAKEKVKEQNLVKARTAVMAGYVKTFVELYPDKEPDEVKLTVKVVE*
HighMDraftT1_c101808	HighMDraftT1_1018081	F050059	ARGTALWESLVGKPRGKDTRENHRCFDPRGGLRDTAATALEESASACPHSRRGLTPLGRLQKYPKIHVSTGEESSGSGPDSTQGLRPRHRRESNPERPPRNSPGDWPFLRPAERVPEVPVVSREHLPQLEKIQEVLPSRRDEAHFR*
HighMDraftT1_c119040	HighMDraftT1_1190402	F091029	MSALKEKIILFNNENAKLLEKAMKLEDELKNLQRTKRIDKLFDTFELDKNGLISTKLIMELLTGNKKYDVDEKFDKEGLIKFIESVVEMHSEEEKTLLDSLESALQGNTVFKEDLENPI
HighMDraftT1_c145377	HighMDraftT1_1453771	F037527	FELIERREDLKSKYTAENQRVTAKKEKLFATGDINKFELGSDEKVVDKDRILKDKPYAFEHICKNDTSNLQKIYNQLGYANKMNMRELKKMIKEYCVRYVENVKKFDAEFYPSINDLVGTWTNLETFVMSANLPKPTGAK*
HighMDraftT1_c152293	HighMDraftT1_1522931	F067318	FISNFSLIYNRRHNDYRYKFPVCNKSNCPRARGVCTRDNVCICLKNYITHENFTEYGEYQCNYLQSNQANIFILEFLFGFGTGHFFLGNYILGFCKLIYTLITAFLVAVSPCLEENKMLPPKLTKTKNFMIVGYVIWQLFDGAMILFDKYKDSNGVPMNSSWS*
HighMDraftT1_c171935	HighMDraftT1_1719351	F004268	YTYMELLNEVVSKRVEQEIPKAHVKQFLLPEFFDPNKTESNDIYINAIFEYIINHLEEKNNMYVVLLYFYPFIKHEEEKTAENFFNFIRFITHSHREISKENVRKWLFHYLSFCTWGITSSIKSKLATNDDMNSSFNSLLKGPYSEDNLHKFLDKITQSLCEDPNASVYTLDMFKDMFKKYDISCVENIRDYLLTESIY*
HighMDraftT1_c174202	HighMDraftT1_1742021	F026764	SKFLVYDELCKIKPHNARVMGLAYDPKPGYIYSCGSDRKFILSEINYLSNVTEIAESNAGYTNLQFDKANDRIFLTNEAGILSVFMTNSFPPSLVNVIQTHSTHCIRGLDIDYSKQYIFTGTNKGDISILDLGQPGKEKLIKEISYFGGNLEIRIIRYNAIDREIYTGDQKGKITVWSLKSGQSIYAWQAHQEAITQMKYFPNKRQLLSMAKDKKIIYWQLPENWVNDSIKKFQEENIREINNTRATERLQKAAQKKEGDDDSSSDDSLDGWDIRP*
HighMDraftT1_c176698	HighMDraftT1_1766981	F057038	ESTYSKKTEQNETKFFTDFYLTNPNKHMDYIELVFDRMAYKFKPFEEKKDGKFRPKIRFGNDQKYLFKHWIVGVDVIGVDRFDFNFEDSTVKLYSKPSYDITKSKPQLLRDVFVYMTVICIMLGFMFRVFCQKKKANEIKPGEELIELN*
HighMDraftT1_c183404	HighMDraftT1_1834042	F019573	MSMQFAQGYGTTSVGADFGAQPSLGPNIFPAQPGQLPPEAFQSQTPTVRTLPPKVVKNTLPPQYKTNTLPPKVVTTRLQPIFPPGTAPTALPQF*
HighMDraftT1_c186478	HighMDraftT1_1864781	F048664	MSLITFDVKFKNKVDNESVRLLPDSELQQLKLMICGKYKIYDLNTLFIYYKGNLITQSDMTKIKEIFKMKRVRIEISETPLEKKKEDFKYFCSCKAGATSICDKCDEFLCDSCFKKKKHINHTNKIIKLSDYHSYIKTTLKDFASELDNKILNDEAYQFFQYWGYDVEN
HighMDraftT1_c194193	HighMDraftT1_1941931	F077961	MSGNDKNTMSNHEIKTSLISIYDKINKPPTKEVGYDLFLKLVHRNLDSSAQMNFIINHIGEFISPLTPKEKDPCIKLLSLIFYSPESDEDSFDTKIYYPFLSPVLSILQNLIKDTNSSIFPTISNIFAEIVQNIMPTDIEASNIDLEPDEKTAYEMLQGFCIYNMKYDDKSNRIVGSLCLTKLVENCPIVLQRQYMKLI