3300000060: Panchlora_midgut_metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300000060
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046786 | Gp0051899 | Ga0026009
• Sample Name: Panchlora_midgut_metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 765263861
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Panchlora Sp. Gut Microbial Communities From Gamboa, Panama
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Panchlora Sp. Gut → Panchlora Sp. Gut Microbial Communities From Gamboa, Panama

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Panama
• Coordinates
  • Lat. (^o): 9.116667
  • Long. (^o): -79.7
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014156	Metagenome	265	Y
F030633	Metagenome	184	N

Associated Scaffolds

Scaffold	Taxonomy	Length
PaMGMunAill_c0118007	Not Available	672
PaMGMunAill_c0213924	Not Available	561

Sequences

Scaffold ID	Protein ID	Family	Sequence
PaMGMunAill_c0118007	PaMGMunAill_01180072	F030633	NSRDKYHSERGFLGMFPIMVAPLGEVCGVPRRLL*
PaMGMunAill_c0213924	PaMGMunAill_02139241	F014156	MMVTRSLLDDTVIKQLKWYGHVERMGEKRLSTKQAVTWCSTIKK*