3300000053: Coal bed methane well microbial communities from Alberta, Canada

Overview

Basic Information

• IMG/M Taxon OID: 3300000053
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047444 | Gp0053978 | Ga0010792
• Sample Name: Coal bed methane well microbial communities from Alberta, Canada
• Sequencing Status: Permanent Draft
• Sequencing Center: McGill University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 201463969
• Sequencing Scaffolds: 19
• Novel Protein Genes: 22
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
• Type: Engineered
• Taxonomy: Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Alberta, Canada
• Coordinates
  • Lat. (^o): 52.119
  • Long. (^o): -113.78
  • Alt. (m): N/A
  • Depth (m): 686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001293	Metagenome / Metatranscriptome	729	Y
F001354	Metagenome / Metatranscriptome	716	Y
F001926	Metagenome / Metatranscriptome	616	Y
F003495	Metagenome / Metatranscriptome	483	Y
F004995	Metagenome / Metatranscriptome	415	Y
F010898	Metagenome	297	Y
F012849	Metagenome / Metatranscriptome	276	N
F014975	Metagenome / Metatranscriptome	258	Y
F017607	Metagenome / Metatranscriptome	239	Y
F032550	Metagenome / Metatranscriptome	179	N
F035754	Metagenome / Metatranscriptome	171	N
F039951	Metagenome	162	Y
F054611	Metagenome / Metatranscriptome	139	N
F077781	Metagenome / Metatranscriptome	117	N
F078238	Metagenome / Metatranscriptome	116	Y
F086630	Metagenome / Metatranscriptome	110	N
F096661	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Draft_c005541	Not Available	687
Draft_c016890	Not Available	619
Draft_c032993	Not Available	1193
Draft_c033672	Not Available	1290
Draft_c051242	Not Available	633
Draft_c052134	Not Available	621
Draft_c052255	Not Available	808
Draft_c059662	Not Available	1031
Draft_c061562	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	818
Draft_c061771	Not Available	537
Draft_c072511	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	769
Draft_c073944	Not Available	592
Draft_c077406	Not Available	640
Draft_c328605	Not Available	577
Draft_c329515	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	594
Draft_c330773	Not Available	621
Draft_c334773	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	748
Draft_c359410	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	709
Draft_c360136	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1590

Sequences

Scaffold ID	Protein ID	Family	Sequence
Draft_c005541	Draft_0055411	F035754	DADGNVNVRLAYAYDTPPSRMGKGDQPFFLTSMTTLVSEKIDILXHSQASLEGKPLALKRSIQVSDGLRSYFSKITDLMQRNLLSWYEDDLVIAKDMVDNATELENDQGRSGLCSCACSPTVTSFMALNEYESLLSSLSIQEEALNAPLAHDMSRDSVEASASARIQ*
Draft_c016890	Draft_0168901	F039951	DLKKTIKNIKPKQSNFLLTLNTNMQYKEDDKHLKDDIEIFDGCINELLNNVDQYIKLPETDQWNEDTIKNCDIDYTIERGTKKGXLHIHIMFKIKHFTRIQLNYDKIKTKICDDLGLKNIYCYNRLLKPNDSDNVQDYINKYV*
Draft_c032993	Draft_0329931	F012849	STFTNLCIRNRHIIPGNIIIAIQSIMNVPKTIRLNANLLALFKFADSETVLEDVYPLFSAFVKEEQFKELYEYATKEPFDALVIDATRGKPVFKKNFDKVLNIS*
Draft_c032993	Draft_0329933	F017607	YFKKDIVKSREAFNELEKVRLNYKPTKKPLILDQSNIPPDMMNTIRNNNAFENEFWRTHNPYKFTPHIDYKPKYTPPYYAPQETGFGSFSYESYVNNLKRI*
Draft_c033672	Draft_0336722	F039951	MSNKPLIKVKGKIQDLQKTIKNIKPKQSNFLLTLNTNQQFKEXDPHLKDDIEIFDNCINQLLNNIDEYIKLPEGDSWDDKTIKNCDIDYTIERGMKKGQLHIHIMFKIKHFTKVQLNYDKIKTKICSSLGLKNIYCYNRLLKPNDSDNVEDYLNKYT*
Draft_c051242	Draft_0512421	F086630	TLDMFRLNSASLTFNTTDEGNQFRRKQQLTRNKFFFKCTRENPMPKHRWESYLRQVKAMVVDHFVRSIRHQSKNLPKHYETLFTGSEVPAGPIELSQVQRDKRKLGTMCHALIAEHMFTPNLDAQTGDDAIIDTFTQEDSVRATRSNSRGDRLLLDRKKAEWRRHLATVRSTLSEIFLWXIREVSTIEIQQDFEQVFRSHILQNQAAQGG
Draft_c052134	Draft_0521342	F010898	MDKINIYINSKNRDLNESISNFTVRIPQNLLRLEQGEHFSLNVNGFYCYNSWFNCIDGFNNEFQIIIKNMNDEITETYHYKLNDGNPNVNDVKTNLNGLLINKVLVSYDKQRNKFIFKRSLPVSTQNYTMYLNIINSEDFLGFYKSDRNI
Draft_c052255	Draft_0522552	F054611	MSDIDEERLQTLMELVNKENPDLDPYVIWVICVNYLLNEQGIYGDEEIAKQLREQRNHELKYDIKVI*
Draft_c059662	Draft_0596622	F054611	MXDIXXERLQTLMEXVNKENPDLDPYVIWVICVNYLLNEQGIYGDEEIAKQLREQRNHELKYDIKVI*
Draft_c061562	Draft_0615622	F012849	MKLLYKFNFVKFQDLEKPKYXDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKHIILDDIYPTMS
Draft_c061771	Draft_0617711	F032550	YFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLIPQRIILISSTANSDSNIIFKSLKNLDWENDVIENYEDDLLKIKMEELKYDLDHSKDYKLYKEAWHNFVKCKSIDDLSDDELKILYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNI
Draft_c072511	Draft_0725111	F003495	MKENNEKKIKNCDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGR*
Draft_c073944	Draft_0739441	F096661	DEHAKKFLAKFSSDSKKRNQKPSLLLDDLRELGMFGELSEDQNHITMPFEDVHRLVTTMRMTEVILNERIQXKRKAKLDFLTSQLDASECNDMPALLAELEKTKAALKQKYSFQQVGVFGNEPVIELEGIIHFETLLLARAIDWLARLSIDPDSEARRGTLSVFSELKAAYSAQSSLHELYFHQYDDKKALEDRVRG
Draft_c077406	Draft_0774062	F004995	GFYKSDRXIXILLPYLNNVXSNXIXNILGDEAIXIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLKYNNEDGGDSFNYKLANVEQITWFTLSVYNQDNEFIPNFSDYILLLQFIRHRTEEGRTEMALNTLIDYVKQIYLLISHFLFPATA*
Draft_c078184	Draft_0781841	F078238	KPEDPRNINKKMKQLFNDYYNKEKDIKNYNGVEFVAYDKEYSDEALDNDEYDKKNDEIDLIEKHFNVNINVYTHDEPELLQIDRRSITNYDDTLNLMRYNNHFMYIKNLQQIRHCYRCRKCDKIFKNMEACNRHEKTCDELVKHTFPGGKYNKSKSIFDRIEELYNDLIKKEKTY
Draft_c328605	Draft_3286052	F004995	SGDEAIIIKISGDCILLGNTVDNFGISTYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRIANIEQITYFELSVHNQDDEFIPSFSDYILLLQFIRHTTEENKLNSLLETILDYIKQIYLIISQIVFPPS*
Draft_c329515	Draft_3295152	F001354	VEDAAAHLFKTTNATIVAVFKVNPMFGTRVLYRAYTKEGRDKTNDGLDVGLFTQNAANNADVVRLMASEIPCGEYRSAQSEMGLWYIAKGVTYTCRISIPPDPSRFVGQITVGWDNE
Draft_c330773	Draft_3307732	F014975	MEKLFEQFKNMLVIYPKYQGYVCGYNDAHFIVAVETNDVKNFFRKMENPTIMEEYKDIKYRYIFADESDLLK
Draft_c334773	Draft_3347731	F077781	RPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*NHRSSGHTCFRERMLRVSCRLSLDLSSSWVRG*
Draft_c359410	Draft_3594102	F001293	MIRNSFICKLINVQASMKENNEKKIKNCDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGR*
Draft_c360136	Draft_3601363	F001926	VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRKRYERERIKIEKLLTLGYTTSGDP*
Draft_c371747	Draft_3717471	F078238	LDDKIVESYKGIEYVAYDKEYTDEALDNDEYDKKNDEIDLIEKHFNVNINVYTHDEPNLLQIDRRSITNYDDTLNLMRYNNHFMYIKNLQQIRHCYRCRKCDKIFKNMEACNRHEKTCDELVKHTFPGGKYNKSKSIFDRIEELYNDLIKKEKTYILYHNFNPIVPDKK