3300000035: Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12

Overview

Basic Information

• IMG/M Taxon OID: 3300000035
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0060822 | Gp0051908 | Ga0026034
• Sample Name: Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1169488613
• Sequencing Scaffolds: 1
• Novel Protein Genes: 3
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hoatzin Crop Microbial Communities From Cojedes, Venezuela
• Type: Host-Associated
• Taxonomy: Host-Associated → Birds → Digestive System → Crop → Lumen → Hoatzin Crop → Hoatzin Crop Microbial Communities From Cojedes, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Cojedes, Venezuela
• Coordinates
  • Lat. (^o): 8.956944
  • Long. (^o): -68.299167
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004001	Metagenome	457	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
HCE12Call500_c0293898	All Organisms → cellular organisms → Eukaryota → Opisthokonta	7541

Sequences

Scaffold ID	Protein ID	Family	Sequence
HCE12Call500_c0050041	HCE12Call500_00500416	F004001	SPSLEVFKKHVDMALQVPWFSRHGGVGCMVGLDDL*
HCE12Call500_c0279643	HCE12Call500_02796431	F004001	SLEVFKKRVDIALQDMFSRHGGVGCMVGLDDLRGLFQP*
HCE12Call500_c0293898	HCE12Call500_02938989	F004001	AVVESPSLEEFKNRVDVALHDMVFSRHHGVGVTVGLDDLRGLF*