2236876020: Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:

Overview

Basic Information

• IMG/M Taxon OID: 2236876020
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047444 | Gp0052798 | Ga0011267
• Sample Name: Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:
• Sequencing Status: Permanent Draft
• Sequencing Center: McGill University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124936635
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	2
Not Available	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → Desulfatitalea tepidiphila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Chroococcaceae → Geminocystis → Geminocystis herdmanii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004383	Metagenome / Metatranscriptome	440	Y
F011593	Metagenome / Metatranscriptome	289	Y
F021795	Metagenome / Metatranscriptome	217	Y
F036301	Metagenome / Metatranscriptome	170	Y
F043480	Metagenome / Metatranscriptome	156	Y
F055749	Metagenome / Metatranscriptome	138	N
F064744	Metagenome / Metatranscriptome	128	Y
F064746	Metagenome / Metatranscriptome	128	N
F091989	Metagenome / Metatranscriptome	107	Y
F104571	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
2244389805	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	11296
2244390288	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	3744
2244390822	Not Available	2596
2244391222	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	2159
2244392223	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1603
2244392524	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1500
2244392855	All Organisms → Viruses → Predicted Viral	1410
2244395235	Not Available	1025
2244396769	Not Available	872
2244412898	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → Desulfatitalea tepidiphila	515
2244414647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Chroococcaceae → Geminocystis → Geminocystis herdmanii	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
2244389805	2244004451	F055749	MNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPDVGDTSEWNTTNNPDLPSGASMWTQLGPLLVLAVLAMVIGLVIMYFRN
2244390288	2244007666	F055749	VPGSNNPMNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPALDEGSEWNTTTNPDLPSGATMWTQIGPLLVLAVLAMVIGLVIMYFRN
2244390822	2244009874	F004383	MPWNPCQDCPGDEGGCMEHPAECGVAKRPPTEQGIQISTDNLLERAFMASIRSEEYAADLRVLQQEFDKRPDVIDLKRRIDQCEHERKTCIDQAREAGISKQGPFILKVRTRKTRTVLPEKFFARFGTETFVACSTIAIGKAEAAVGKGTFDDCCEIEVKETGVSVEYVRPEGRA
2244391222	2244011211	F064746	MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPADLEDQFGIPDGAYDWTGFADYSAFDYRSGEPSGSITKAGWAHIFVLKPDEDLADNSSIDILKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAIAFFLDDDTVALIDVETTNDFGMSAWDVINSITVN
2244392223	2244013983	F043480	MNKILFMVGLSIALAAAALLFLNIIESGVAAIIGIIGLGLIAVSR
2244392524	2244014717	F091989	MKLSTYARDITNRARANCYATDATRASDPLIRPFGEFDELQATLKSLQGTTMALCWVNSEGKAVPFNEAEFNAVQKEIADLQGKINHNTKILDALDAKVAKLGLTEPSIGKLKAQKEKLREQINQIRAEEKDSLANKWQAVVTLGGNRGMYDALPEVQEARAKAAAQIEPIEAQILALDRQIRDLESILSKFKK
2244392855	2244015490	F104571	FTDDFKISDNAGLFVQPATVNYETGETKEYNLFRKDNGAWVTGAKAYVNTGDYQLTIKPIVGNGNGKVLLFLQTSLPKIIHGENYQALNNDETVQAIDAIADDLQDRGVGVNLQECKTSRIDVFRTAIADNPFSSYAPVFRLLNAKRSHTTDYGTTFTWANTQREICVYDKAVEMQNRGVKSSALPTNAIRFEYRLKTSRVCKNETGAGNVRELVNNLDNLQDVYRQALENSIFSLDAQALATVTANELENGLRVYAKRYGGAFVNRFFRDFGAYALGRLTGVETVKSVLSSVLGDRYKLWRHSKLFDEYRMNFEMARGGLGDNTLKDFYLELKEKILPDNRCETGDLASV
2244395235	2244020412	F011593	VTDNNLSAPEWCLGCPDPIYDDRRGEWDWYCRQHSPTGIRCSNVAVLRERCYRVRDYFSNREAST
2244396769	2244023179	F064744	MAMEVIDGAYQLLLARLLAIEADMAVLRERVEELEDELHETWMGGTD
2244412898	2244045691	F021795	NIHQCYL*RVKGMKKEADRIRRWRERQKAEGKSSFTILLSQEAREFLAEEKEKTGESYAVIVEKALHTLKKQGYRPPVLKHFPKREDVTARAAAREHHPPVTAVTIHDKGAQPRILIDDL
2244414647	2244048168	F036301	VVTSLPLSRRFIPRAIYHSRNHIQEETRMLRSTKILIHDERPDSPEFLLEIVVDRGYKAGFAKDGNEIIAMLSNDQYDVVLTNGGYGELNPDQYMQIQSSSVFIIDIADSHTQNHTRDVKADLYLSRPLLISELWKSLEKPF