2236876017: Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - SS13

Overview

Basic Information

• IMG/M Taxon OID: 2236876017
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0050867 | Gp0052554 | Ga0011262
• Sample Name: Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - SS13
• Sequencing Status: Permanent Draft
• Sequencing Center: GATC-Biotech AG, Konstanz, Germany
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 370217159
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Water Concentrator Pond Microbial Communities From Bras Del Port Saltern, Santa Pola, Spain
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water Concentrator Pond → Saline Water Concentrator Pond Microbial Communities From Bras Del Port Saltern, Santa Pola, Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline evaporation pond → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Spain: Bras del Port
• Coordinates
  • Lat. (^o): 38.11
  • Long. (^o): -0.36
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019144	Metagenome / Metatranscriptome	231	N
F031511	Metagenome / Metatranscriptome	182	Y
F073153	Metagenome	120	N
F075754	Metagenome	118	N
F086685	Metagenome	110	N
F097996	Metagenome	104	N
F104555	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SS13_p0176375	Not Available	500
SS13_p0888308	Not Available	505
SS13_p0900968	Not Available	502
SS13_p0981254	Not Available	501
SS13_p0982911	Not Available	504
SS13_p0995014	Not Available	510
SS13_p1215019	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
SS13_p0176375	SS13_01763751	F031511	VASKIPGGGGEVKLNFKGMGELLRSSELESELRNRMRRVQAAVPGSELYTTTSRRARAVVARGSDFDEANTGELSRALDLAGGQRGFKVKTN
SS13_p0888308	SS13_08883081	F086685	MIELTSIPLGLWFIGCAFFVILGHELTHYVAWLPVATSIEYHFQEQYIEAEYPDTAFARKWAAVAGISPIIVATGLVLALIASGWNPTATWHHITASAAVVLYGISGGKSDFVAL
SS13_p0900968	SS13_09009681	F075754	IHARVDDTSEWYAAQVDRSEYLRDSEDDADMHHRKGGVVAEGLVKAIFAGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKPSTNYYAVVRNHPDYWLIGHINSIRFWYLCDRSAPDFWDDEQFDGGFLSYEHFQQLPVNEPISPPPAIEV
SS13_p0981254	SS13_09812542	F019144	MQGIQDNAHRVADNLAATSVLGAITANLPIITEWMQMIAALIGICSGLAALRFYLKRTSQLDGEE
SS13_p0982911	SS13_09829111	F086685	MIELTSIPLVLWAIGCAAFVIVGHELTHYIAWLPVATSIEYHFEEQYIEAEYPDTAFARKWAAVAGISPIIVATGLVLALIASGWNPTATWHHITASAAVVLYGISGGKSDFVALFSLVRTLRSPAAD
SS13_p0995014	SS13_09950141	F073153	MSDRDLPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIKIRLNTLEGRIE
SS13_p1215019	SS13_12150191	F097996	MTNRDGIRXPRYLGWQVDWPVFVKMPFTADGKNWKKSEHFNWAERELEMKDVASLYAQGFIYHNSELAKANKVGDRLGEMNKEQLYSLVVQLNGIVKDKTTTTKEFNDKRCKQSKIEDKQRGLIRRFLNRNPWIVDDFYQLRDHILGNT
SS13_p1357515	SS13_13575153	F104555	MTATERLDWILDSPFGGEDLAALPVSDDQTIRQAIRQSIDANGIQATGEHWAAVMDTIGPVPKLYLDTIEVIFNQEVSEVF