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Sample 2236876006
2236876006: Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-0p8-Deep1200
Overview
Basic Information
IMG/M Taxon OID 2236876006 Open in IMG/M GOLD Reference Gs0047387 | Gp0054207 | Ga0011307 Sample Name Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-0p8-Deep1200 Sequencing Status Permanent Draft Sequencing Center University of South Carolina Published? N Use Policy Open
Dataset Contents
Total Genome Size 103840627 Sequencing Scaffolds 5 Novel Protein Genes 5 Associated Families 5
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon 1 Not Available 2 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 1 All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Marine And Estuarine Microbial Communities From Columbia River Coastal Margin Type Environmental Taxonomy Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin
Alternative Ecosystem Assignments
Environment Ontology (ENVO) marine biome → estuary → estuarine water Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
Location Information
Location Cape Meares Coordinates Lat. (o ) 45.483 Long. (o ) -124.918 Alt. (m) N/A Depth (m) 1200 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F037217 Metagenome / Metatranscriptome 168 N F070215 Metagenome / Metatranscriptome 123 Y F071262 Metagenome / Metatranscriptome 122 N F077389 Metagenome / Metatranscriptome 117 Y F099871 Metagenome / Metatranscriptome 103 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link none_p054353 All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon 505 Open in IMG/M none_p082238 Not Available 536 Open in IMG/M none_p089106 Not Available 509 Open in IMG/M none_p106416 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 554 Open in IMG/M none_p182323 All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos 510 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
none_p054353 none_0543531 F077389 NYQEAMLRYYYAPMVGVWLAVAIVCGFVIGFDEVWRYWRVVGLNLI none_p082238 none_0822381 F099871 WCISNSYRHGPNEFLFWSIIMGSFIKFTFNAFDKTYSVHMKKDIFTESGIGLKNETSKALTKANREFLDKFLKEGIDPYPGWWSESSPTDFYWNTGNISTKK none_p089106 none_0891061 F070215 TDWEGDTSNGLPIDEGSYVWPSICPVCPRACMHGESSKWVRMEIIGDSDVAVSGEAHIESINESGDTWTISGNGEGTFYNPYSEANMHGVIEFTNLKIETDTENTPYLIMGTLK none_p106416 none_1064162 F071262 MKSDLQDVLITVARIEERLVTIFNRQALIEERVNSMDEKIQQMNPSVKFGERVFWIVVAVIAAGAGRIY none_p182323 none_1823231 F037217 TIYLNVYKTMDFFGRVVVRFSDATSKLISNYIAKHQLKNGEYLFGTSGKDGKMSATVAAWLVEAGVKDGKVQGQTKTPGAINLLRHAYISQKIKEEDVIKLSETMKHSPLATELYARKIQPLLVENMIKIDERKLVYEEPEMIQTRYEGTRRRENVKEEAKKKAKKGRV
