2228664018: Amitermes wheeleri hindgut microbial communities from Arizona, USA - 3

Overview

Basic Information

• IMG/M Taxon OID: 2228664018
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045332 | Gp0051810 | Ga0011244
• Sample Name: Amitermes wheeleri hindgut microbial communities from Arizona, USA - 3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107774793
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Termite Hindgut Microbial Communities From Amitermes Wheeleri In The Arizona Desert And From Nasutitermes Corniger In Florida, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Digestive System → Hindgut → P3 Segment → Termite Hindgut → Termite Hindgut Microbial Communities From Amitermes Wheeleri In The Arizona Desert And From Nasutitermes Corniger In Florida, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Arizona, USA
• Coordinates
  • Lat. (^o): 31.519
  • Long. (^o): -110.001
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000176	Metagenome	1754	Y
F001073	Metagenome	786	Y
F007036	Metagenome	359	Y
F007320	Metagenome	353	Y
F018445	Metagenome	235	Y
F031909	Metagenome	181	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
AmiMGMT1_c411036	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta	739
AmiMGMT1_c411279	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus	580
AmiMGMT1_c411427	Not Available	516
AmiMGMT1_c411545	All Organisms → cellular organisms → Eukaryota → Opisthokonta	658
AmiMGMT1_c413281	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus	532

Sequences

Scaffold ID	Protein ID	Family	Sequence
AmiMGMT1_c411036	AmiMGMT1_4110362	F018445	MGMLGPLLNRKSDLSIRNGDLLYKQLIRSMMDYACPAWRSAARTHVQRLQVLQSKCFRLATDARWYISKRQIHEDLGVPLFADHIRALTASFDSRLADVGNPLVRQLGRYLS
AmiMGMT1_c411279	AmiMGMT1_4112791	F007036	GIDSLPSFPGSSTVSSSSRFAVEGVFRESGVVHSLEMVDPVLFVFESHVLYSRDL
AmiMGMT1_c411427	AmiMGMT1_4114272	F001073	VVAAHYKKDDLLNCCTNSSDISGYHADFQEGHGTVGAWQGHGMACVN
AmiMGMT1_c411545	AmiMGMT1_4115452	F031909	MEVKMTFYMKKVMHRVKTTMKMILVAVTMIFWVSMMN
AmiMGMT1_c413281	AmiMGMT1_4132812	F007320	RKTRKYRELANEICAMWKQNTVQVIPIVISSTGVIPKSLSQSLKRLNLHPNTYIQMQKSVILGTCSIVRNFLNYK
AmiMGMT1_c413422	AmiMGMT1_4134222	F000176	MWNLKCTIIPVIIGATGIVTRSLSKNLEAIPGKHSIDSLQKTAILGTSHIIRKVLQCEA