NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2228664018

2228664018: Amitermes wheeleri hindgut microbial communities from Arizona, USA - 3



Overview

Basic Information
IMG/M Taxon OID2228664018 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0045332 | Gp0051810 | Ga0011244
Sample NameAmitermes wheeleri hindgut microbial communities from Arizona, USA - 3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size107774793
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus2
Not Available1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTermite Hindgut Microbial Communities From Amitermes Wheeleri In The Arizona Desert And From Nasutitermes Corniger In Florida, Usa
TypeHost-Associated
TaxonomyHost-Associated → Arthropoda → Digestive System → Hindgut → P3 Segment → Termite Hindgut → Termite Hindgut Microbial Communities From Amitermes Wheeleri In The Arizona Desert And From Nasutitermes Corniger In Florida, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationArizona, USA
CoordinatesLat. (o)31.519Long. (o)-110.001Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000176Metagenome1754Y
F001073Metagenome786Y
F007036Metagenome359Y
F007320Metagenome353Y
F018445Metagenome235Y
F031909Metagenome181Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
AmiMGMT1_c411036All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta739Open in IMG/M
AmiMGMT1_c411279All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus580Open in IMG/M
AmiMGMT1_c411427Not Available516Open in IMG/M
AmiMGMT1_c411545All Organisms → cellular organisms → Eukaryota → Opisthokonta658Open in IMG/M
AmiMGMT1_c413281All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus532Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
AmiMGMT1_c411036AmiMGMT1_4110362F018445MGMLGPLLNRKSDLSIRNGDLLYKQLIRSMMDYACPAWRSAARTHVQRLQVLQSKCFRLATDARWYISKRQIHEDLGVPLFADHIRALTASFDSRLADVGNPLVRQLGRYLS
AmiMGMT1_c411279AmiMGMT1_4112791F007036GIDSLPSFPGSSTVSSSSRFAVEGVFRESGVVHSLEMVDPVLFVFESHVLYSRDL
AmiMGMT1_c411427AmiMGMT1_4114272F001073VVAAHYKKDDLLNCCTNSSDISGYHADFQEGHGTVGAWQGHGMACVN
AmiMGMT1_c411545AmiMGMT1_4115452F031909MEVKMTFYMKKVMHRVKTTMKMILVAVTMIFWVSMMN
AmiMGMT1_c413281AmiMGMT1_4132812F007320RKTRKYRELANEICAMWKQNTVQVIPIVISSTGVIPKSLSQSLKRLNLHPNTYIQMQKSVILGTCSIVRNFLNYK
AmiMGMT1_c413422AmiMGMT1_4134222F000176MWNLKCTIIPVIIGATGIVTRSLSKNLEAIPGKHSIDSLQKTAILGTSHIIRKVLQCEA

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