2228664017: Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - sample Oil_dispersant_biofilm

Overview

Basic Information

• IMG/M Taxon OID: 2228664017
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0050523 | Gp0052059 | Ga0011242
• Sample Name: Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - sample Oil_dispersant_biofilm
• Sequencing Status: Permanent Draft
• Sequencing Center: Alabama State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55458552
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
Not Available	4
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → oil spill → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Daulphin Laboratory, Alabama, USA
• Coordinates
  • Lat. (^o): 30.15
  • Long. (^o): -88.446
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019843	Metagenome / Metatranscriptome	227	Y
F020033	Metagenome / Metatranscriptome	226	Y
F022392	Metagenome / Metatranscriptome	214	N
F081287	Metagenome	114	N
F082575	Metagenome / Metatranscriptome	113	Y
F101073	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
2232465422	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	531
2232467569	Not Available	528
2232467740	Not Available	528
2232480726	Not Available	515
2232484652	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	512
2232493846	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
2232465422	2232468987	F082575	MQNEQGFDLAGRSIFIALPAYDFKVSLKLAVSLARFAQAAPRHGISLQIGSICGCSVVSRARNLLV
2232467569	2232472095	F101073	MRYTLCIKGKPDRDYPTLQEAEKAIERELGGFEKINDYLKRNKHVRRSYVCARGKAMV
2232467740	2232472335	F022392	MTNNNTTKETTMKTYDITYIDPWSNREVRHLDVPQSLLKDVDGETWYTGYNKPIEVITATLVDESRHAAKLSYFNTYGTASE
2232480726	2232490953	F081287	MNTIKHFHNIAGGFDRITGGMSGLEAEFKYVAPVTDLDKAQIDVMIASAQNLIVAAEALKSVVFEGQPDPV
2232484652	2232496478	F020033	MKLSPRQIRMMYSHYPDPDPDEDFWPMMGVLAAILLVWTGIIHLLDWLTFDVIPLWAEPFTIAPLIFLVIMKEIYDSINPLHWWPMFWGYRVRLPDDERI
2232493846	2232509448	F019843	MSGKDKSELVKQIEAYGLKNKLADLARKEEARRPFRHLPKQFSKGILIGNIAIVPK