2228664014: Contaminated soil microbial communities from Tipperary, Ireland - enriched with phenanthrene, cDNA isolated at day 31

Overview

Basic Information

• IMG/M Taxon OID: 2228664014
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0050991 | Gp0052522 | Ga0011241
• Sample Name: Contaminated soil microbial communities from Tipperary, Ireland - enriched with phenanthrene, cDNA isolated at day 31
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Liverpool
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21141842
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Contaminated Soil Microbial Communities From Tipperary, Ireland, In A Timber Treatment Facility
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Contaminated Soil → Contaminated Soil Microbial Communities From Tipperary, Ireland, In A Timber Treatment Facility

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Ireland: Spaights timber treatment facility, Tipperary
• Coordinates
  • Lat. (^o): 52.512199
  • Long. (^o): -8.226278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F001633	Metagenome / Metatranscriptome	660	Y
F024800	Metagenome / Metatranscriptome	204	Y
F042356	Metagenome / Metatranscriptome	158	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
PheDRAFT_GXW9OCQ03F1K5X.42006	Not Available	530
PheDRAFT_GXW9OCQ03FZNN7.12884	Not Available	512
PheDRAFT_GXW9OCQ03G4BSS.67174	Not Available	528
PheDRAFT_GXW9OCQ03GBLGT.25308	Not Available	515
PheDRAFT_GXW9OCQ03GD2JJ.25024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	510
PheDRAFT_GXW9OCQ03GDLC6.20596	Not Available	511
PheDRAFT_GXW9OCQ03GK57T.74984	Not Available	529
PheDRAFT_GXW9OCQ03GMZ3G.41429	Not Available	515
PheDRAFT_GXW9OCQ03HE39N.62062	Not Available	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
PheDRAFT_GXW9OCQ03F1K5X.42006	PheDRAFT_00030040	F042356	FGY*SEAQLPRGYPVATVYQHGASDSGGFNQPFETAQ*KPPKGETKERTFRDGHEDSAGPVKTFRTPAMLKTTPLACEQKAT*ESRGETRGAG
PheDRAFT_GXW9OCQ03FZNN7.12884	PheDRAFT_00071390	F024800	VARGQRTAKSGGRPRANGGDAETKSRACLRQVRRPVAQPPAQAGLEASLELQRARAAERPCYEAERTPLAVENSVGKPAANKQGAQCRPGKESVANSHTHFGPCLAARPGRG
PheDRAFT_GXW9OCQ03G4BSS.67174	PheDRAFT_00034030	F000344	MRPRHPHAAESGVGKYTARESESAKACAIGKERVANA
PheDRAFT_GXW9OCQ03GBLGT.25308	PheDRAFT_00063120	F000344	MRPRHPHAAESGVGKYTARESESAKACAIGKERVANAHY
PheDRAFT_GXW9OCQ03GD2JJ.25024	PheDRAFT_00076490	F001633	VRHALFPGGTRLDALAFAGDVLPDATLRGMRMYQSHGGTVLTVTGRDLSSEASAPGSDTPCREWRAGRGADTPATFISRVAHLYREDGINLWLIVGLALRV
PheDRAFT_GXW9OCQ03GDLC6.20596	PheDRAFT_00075940	F024800	VARGQRTAKSGGCPRANGGDAETKSRACLHQVRRPVAQPSAQAGQEASLEIQRARAAGRPCYEAERTPLAVENSVGKPAADPTQGAQCRPGKESVASSHPHFGPCPAARPGR
PheDRAFT_GXW9OCQ03GK57T.74984	PheDRAFT_00031930	F042356	VHQHGTSDSGGGNQPFATAQENRLKGGQTERSNRGEHAGVAGLVKIFRVPAMLKTTPLVCEQNAT
PheDRAFT_GXW9OCQ03GMZ3G.41429	PheDRAFT_00064810	F042356	GVSGLSESQLPRGYKVATVHQHGTGDSGGGNQPFATARRKPPKGGQTERTNRGEHAGAAGRVKIFRVPAMLKTTPLV
PheDRAFT_GXW9OCQ03HE39N.62062	PheDRAFT_00045720	F000344	MRPRHPHAAESGVGKYTARESESAKACAIGKERVANAHS