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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2228664000 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046786 | Gp0051899 | Ga0026011 |
| Sample Name | Panchlora_midgut_metagenome |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1005314116 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 13 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda | 3 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Phasmatodea → Timematodea → Timematoidea → Timematidae → Timema → Timema tahoe | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Panchlora Sp. Gut Microbial Communities From Gamboa, Panama |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Panchlora Sp. Gut → Panchlora Sp. Gut Microbial Communities From Gamboa, Panama |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Panama | |||||||
| Coordinates | Lat. (o) | 9.116667 | Long. (o) | -79.7 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000153 | Metagenome | 1895 | Y |
| F005709 | Metagenome | 392 | Y |
| F014156 | Metagenome | 265 | Y |
| F016016 | Metagenome | 250 | Y |
| F023128 | Metagenome | 211 | Y |
| F030633 | Metagenome | 184 | N |
| F038460 | Metagenome | 166 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2228747629 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda | 966 | Open in IMG/M |
| 2228798801 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda | 822 | Open in IMG/M |
| 2228828852 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Phasmatodea → Timematodea → Timematoidea → Timematidae → Timema → Timema tahoe | 765 | Open in IMG/M |
| 2228900837 | Not Available | 670 | Open in IMG/M |
| 2228974018 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta | 605 | Open in IMG/M |
| 2229040101 | Not Available | 561 | Open in IMG/M |
| 2229043217 | Not Available | 559 | Open in IMG/M |
| 2229070443 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda | 544 | Open in IMG/M |
| 2229135792 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera | 512 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2228747629 | 2228854355 | F030633 | MQLIAGSQTQEAIEKKVSLDKSEHYDWNDNQFKHHSDRGFLRMFPTMATPLGEVYGVPRRLL |
| 2228776747 | 2228898195 | F000153 | MRIIIAKEAFNRKISLLTSKLNIQLRKKLVRCYVWSIT |
| 2228790564 | 2228918097 | F023128 | MPVVLYGCETWSLTLREKCREIIFENRILRRIFGRMKDEKRE |
| 2228798801 | 2228929762 | F030633 | VTSDCSPNSRGQAISDKRRHYNCRAKYHSKRGFFGMFPTKATPLGEVCGVPRRLL |
| 2228828852 | 2228971491 | F023128 | CEAWPLTLREECKLRVFEDWILRRLFEPKRDENGEW |
| 2228900837 | 2229066631 | F038460 | MDFNNARLHEATLNLHTHA*IFSRLSVMPVDGKQHMSEVVFS |
| 2228950021 | 2229128511 | F000153 | MRIAIAKEAFNRKKSLLTSKLNTKLRMKLVRCYVWS |
| 2228974018 | 2229158100 | F005709 | MTIVVKSVLTRDGYCTREIMMRIAIAKEAFNRKISLLTNKLNIELRKKLVRCYVWSIALYGS |
| 2229008597 | 2229200015 | F016016 | KEAFNRKISLLTSKLNIELGKKLVQCYVWSIALYGSET |
| 2229040101 | 2229237242 | F014156 | MMVTRSLLDDTVIKQLKWYGHVERMGEKRLSTKQAVTWCSTIKK |
| 2229043217 | 2229240920 | F038460 | VDFNEARLHEATLTFHTHAWIFSRLSIASVGGKQHLSEVEFSALVGFSLGENTVYWL |
| 2229070443 | 2229272847 | F030633 | QTQEAIEKKTISDKRGHYDCNDSRAKHRSERGFLRMFPTMATLLGEVCGVPRKPL |
| 2229135792 | 2229348053 | F023128 | VLYGCEACSIILREERKLRVFENRILRRILGPKGDANGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |