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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2222084004 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0050523 | Gp0053933 | Ga0011223 |
| Sample Name | Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - oil_4 |
| Sequencing Status | Finished |
| Sequencing Center | Alabama State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 30981804 |
| Sequencing Scaffolds | 11 |
| Novel Protein Genes | 13 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → oil spill → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Daulphin Laboratory, Alabama, USA | |||||||
| Coordinates | Lat. (o) | 30.15 | Long. (o) | -88.446 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008926 | Metagenome / Metatranscriptome | 326 | Y |
| F014008 | Metagenome | 266 | N |
| F015864 | Metagenome / Metatranscriptome | 251 | Y |
| F021974 | Metagenome / Metatranscriptome | 216 | Y |
| F022527 | Metagenome / Metatranscriptome | 214 | Y |
| F023090 | Metagenome | 211 | Y |
| F034920 | Metagenome | 173 | Y |
| F038197 | Metagenome / Metatranscriptome | 166 | N |
| F046080 | Metagenome | 152 | Y |
| F052539 | Metagenome / Metatranscriptome | 142 | N |
| F073575 | Metagenome / Metatranscriptome | 120 | Y |
| F100945 | Metagenome | 102 | Y |
| F101077 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2222454579 | Not Available | 506 | Open in IMG/M |
| 2222455386 | Not Available | 505 | Open in IMG/M |
| 2222456529 | Not Available | 503 | Open in IMG/M |
| 2222494886 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | 550 | Open in IMG/M |
| 2222503243 | Not Available | 534 | Open in IMG/M |
| 2222505771 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 528 | Open in IMG/M |
| 2222509626 | Not Available | 521 | Open in IMG/M |
| 2222513542 | Not Available | 515 | Open in IMG/M |
| 2222514363 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 514 | Open in IMG/M |
| 2222514600 | Not Available | 513 | Open in IMG/M |
| 2222515930 | Not Available | 511 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2222454579 | 2222540061 | F101077 | MFISEWNKSDWRSTETWESVNCSSGDVTITKIGDGFMGRDPNGMLVSQFPDTWENTVRMMESCFDWRVDLG |
| 2222455386 | 2222541249 | F022527 | MWVAKPNLNNNTGLKEFENVKEAVAYLEEYTGIEMAYERNRKAKKITYDWE |
| 2222456529 | 2222542950 | F015864 | MTDIRYSTGEELEQFLYEKCKEDSDLLATIISEYVCSLSDSKLTELEDFLTNNFGDD |
| 2222456529 | 2222542951 | F021974 | NNTNIVSEIYSYHTDWKEGKVNQMWIEQSGDENKGYSYVAVAHNPRNGKTMEMSNPRTSYQETLKWVRGWCGTFCTLPA |
| 2222494886 | 2222592278 | F034920 | MAEKKKKNKKWIQGMKMKEGAFTAKAKRRGITSAQLQ |
| 2222503243 | 2222602469 | F014008 | MVRFTKINNTEVPVSFGNATLIRFEEETGISILTLGQETLNYKNTLKLIYEALRDGHRKDGKSFDWTFEDMCDEFDEDMAAINRVMELFSNSMPDAE |
| 2222505771 | 2222606427 | F046080 | MLKVGNTGDEILQILDVIVADIESEKTMNEIAEILF |
| 2222506773 | 2222607942 | F100945 | MDETIIEAPKVDFFLKLASEADMPTAFADFYKQDYVTVVDEETGEETQTPDGDKYLVTHTHDYAIDVVGVIHEPTGNMLTDAEGTEYPETAPVDGWHVNVRLVGDAVRESVEAIDAVYGVVPNSPSRVFL |
| 2222509626 | 2222612330 | F023090 | MAIYKEISSKVIIRKVMRDLKPNHANWIDDAVEWIGEALEHIGAATQLKQKQCVLDIVDHKALLP |
| 2222513542 | 2222618181 | F038197 | EGVEETMKKLKKLDDRLKKRIIKKVGRKSLPPMVDSYRKNIKDADEVFKVYREGKIVYEIMPGQLRRSVGIKSPKALQSKNVIGLSVGPRRSGAYRNPEKGGWYAGFINFGWLRVGGGKKYTGENRGFAQKAQSADKMKVQVKLLVTSRP |
| 2222514363 | 2222619429 | F008926 | TDEPVKLHDDAMDAIRYAVQYIKSEYYQDNSYISF |
| 2222514600 | 2222619784 | F052539 | MKVNKDSFTGMVTYDLPNGKSFKVPYKNRNYCVAADGDEVPSTYNGKTYIYMYDYTKRHHDYYCFEDDISTDVAPWEK |
| 2222515930 | 2222621844 | F073575 | ESDSHIDEIDVRITMVSTKYSDTQNAVEYIRSAFVRMDETIGGVKVKSCVFDGQRDLFSDDERTFGSQCDLKFRVSRD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |