2209111001: Sinkhole freshwater microbial communities from Lake Huron, US, Illumina + 454

Overview

Basic Information

• IMG/M Taxon OID: 2209111001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045862 | Gp0053889 | Ga0011324
• Sample Name: Sinkhole freshwater microbial communities from Lake Huron, US, Illumina + 454
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Michigan
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39112987
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sinkhole Freshwater Microbial Communities From Lake Huron, Us
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → sinkhole → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Huron Michigan
• Coordinates
  • Lat. (^o): 45.19843
  • Long. (^o): -83.32721
  • Alt. (m): N/A
  • Depth (m): 23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010231	Metagenome	306	Y
F093370	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
2210013218	Not Available	518
2210014010	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
2210013218	2210205924	F010231	VHLAGFAPAFTLSFHDSECSRKPPNAHSLGRYVAF
2210014010	2210207378	F093370	IPRNSTEPLKVGDQVQIVPEWQDPGDDKYERFVIEAPTDCTSVRIRTVVPGLVFQPGEWIEADRLVLLPAEN