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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2199352032 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047522 | Gp0053600 | Ga0011322 |
| Sample Name | Cave microbial community (Speleothem A) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Arizona Genomics Institute |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 168969099 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 15 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales | 1 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → cave wall → rock |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Arizona | |||||||
| Coordinates | Lat. (o) | 31.837801 | Long. (o) | -110.350292 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000195 | Metagenome / Metatranscriptome | 1659 | Y |
| F003218 | Metagenome / Metatranscriptome | 500 | Y |
| F009825 | Metagenome | 312 | Y |
| F020728 | Metagenome | 222 | Y |
| F020970 | Metagenome / Metatranscriptome | 221 | Y |
| F021079 | Metagenome / Metatranscriptome | 220 | Y |
| F030702 | Metagenome / Metatranscriptome | 184 | Y |
| F038432 | Metagenome / Metatranscriptome | 166 | Y |
| F038611 | Metagenome / Metatranscriptome | 165 | Y |
| F043266 | Metagenome / Metatranscriptome | 156 | Y |
| F045594 | Metagenome | 152 | Y |
| F069895 | Metagenome / Metatranscriptome | 123 | Y |
| F082936 | Metagenome | 113 | Y |
| F091062 | Metagenome / Metatranscriptome | 108 | Y |
| F105116 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2206354496 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 504 | Open in IMG/M |
| 2206370596 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 502 | Open in IMG/M |
| 2206378124 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 502 | Open in IMG/M |
| 2206400340 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia | 500 | Open in IMG/M |
| 2206401158 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium | 500 | Open in IMG/M |
| 2206581106 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 532 | Open in IMG/M |
| 2206612469 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales | 524 | Open in IMG/M |
| 2206650217 | Not Available | 518 | Open in IMG/M |
| 2206655768 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia | 517 | Open in IMG/M |
| 2206656097 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 517 | Open in IMG/M |
| 2206665797 | Not Available | 516 | Open in IMG/M |
| 2206694672 | All Organisms → cellular organisms → Bacteria | 512 | Open in IMG/M |
| 2206758276 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes | 506 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2206354496 | 2208047168 | F003218 | RTYARSRFPRCDPRLRRRSGHRLGRRREGLFEDTIPRGKSSSVTFTVHRAASFRIVLRVPTQGRAKLFLLGKTAPRGGPLIDTKTYACEGAAGSFYCRAAYEPLPRGTYTWRISWSGRTAAHVELTVRW |
| 2206370596 | 2208067062 | F021079 | MVIQVLLAADDREAGATTVSTTIEVNTGDPCWPTWLVEAVTYQAQEGARRLRDQLVTQHAISGDGFVPLAAVVPAAGAGASPVLGRLPAAPGSPPP |
| 2206378124 | 2208076460 | F020970 | IGDTNERANGTAVLKIEYSDGKAGVLTVGCHGPGAPPGIFEGIAVTKGFTTYYAVQPPAAGVDANRTLFHVRR |
| 2206400340 | 2208103719 | F038611 | LAWMRMMGADSVAYHKATVLGRADDFPGQALDYYASRGETPLVWGGACVSGWAWWVG |
| 2206401158 | 2208104713 | F045594 | VTDDPAERIRTLLPRGDNLLKSGRLERVGRAIEAFEEARGIAAHDAVDPRVRELVERRLAAVRALAGEDDAHTDQS |
| 2206581106 | 2208281903 | F038432 | MLACASTVSAARADSPAAKKRIVREWSMRLNAYDNVGAAKLFARPATFVQSGYVFQFDSTANIVLWHRRLPCAGRIVSITVKGEYATAVFVLRNGKHRRCDAPGVKAAAVFRIRAGKILTWAQVSVPGPPGPIA |
| 2206612469 | 2208323757 | F082936 | KGYVVHGEMAYQAWIHGFRLGEVPIHFRNRRREASKLTTEEIYMALINFALLRFRYGFRPRQRVSTQVAP |
| 2206642464 | 2208363188 | F020728 | MFILLWGVGILNYTDAAQTIYLLNVKFMVEANRFMAFLLDHSPYVFWMYKTLVPTLGCVLLWRFRKQVKWLPGAVITVFAVYLTVV |
| 2206650217 | 2208373197 | F091062 | MAILTPEEKEFLDVFLYEATTSPFFNGPATKALYAIGVEYRDISYIAWAYEQEVPRTSFELGHSAEVAPPLPWISRESVLRRNLEIQCIWEQERKPVGHAQCSLSGGQAGP |
| 2206655768 | 2208380425 | F069895 | TFRIPRESFDIPGMGERLTADNLLKAVGIATEEVQSWRHEGASRSGNEPHSELGHPLPPPPQDVTHLNLYVSLKPPPRAVAPNESCEPEVPEAKWQGLEARWNAILGLEASMDTLRISMEALRAEMEASSRRTLTPDEKYHALNADVAQWNKAKSRVHYALPKVREFIHRST |
| 2206656097 | 2208381129 | F105116 | MTCPKCGTEMNHQAEKLVYPVTAAEAERMTAALDGVIENVFACPGCGWVDSWREPGVPAAPR |
| 2206665797 | 2208393624 | F030702 | MSALDTKLGRRQVLKGLMIAGPTLAIAGRLGFADGAGAFPTKTDELPDAQDFTDIFILSQQPTIYDLKIEIRPDN |
| 2206694672 | 2208430893 | F009825 | LVAACQRIDSTFPLVHISTWEGGAYMAAKDAALLMTLREAEMILVSFDRATLPHHAGVATREGLGNAGVVLFRRVVSTTAYGKQARLLVAFWREAHAWDWADRIEYLPRP |
| 2206708268 | 2208448203 | F000195 | VSRQQFDAIGGAKHLPDVLERVLDRAKASGDGYVLHLTYEEATALNELCSWNVHTDAGGAVTPESRVYDDLVKAIMTHPDY |
| 2206758276 | 2208511211 | F043266 | MKCSFCEQPLVCQACRHPFHPRRGETHVAAFQPDMQVNCPECQQPLVCKACGYVYGH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |