2166559011: Human fecal microbial communities from France, for comparison studies - Human5 (TS28 0613)

Overview

Basic Information

• IMG/M Taxon OID: 2166559011
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047475 | Gp0052409 | Ga0010970
• Sample Name: Human fecal microbial communities from France, for comparison studies - Human5 (TS28 0613)
• Sequencing Status: Permanent Draft
• Sequencing Center: 454 Life Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95343112
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Environmental And Host-Associated → Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: St. Chamond, France
• Coordinates
  • Lat. (^o): 45.460129
  • Long. (^o): 4.495284
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F068855	Metagenome	124	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
E4LJNJL01A2TZH	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	538
E4LJNJL01A8Y8Q	Not Available	544
E4LJNJL02BVQHD	Not Available	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
E4LJNJL01A2TZH	Human5-_00269490	F068855	VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYHGSDLHYHVNVSAALSEGGTVW
E4LJNJL01A8Y8Q	Human5-_01912930	F026592	CCLRTASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE
E4LJNJL02BVQHD	Human5-_02007780	F089054	GKFLVPRKIPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSKHIRLQIREMLQIPLRDITIIDIISLP