2166559009: Human fecal microbial communities from France, for comparison studies - Human3 (F2-w 0943)

Overview

Basic Information

• IMG/M Taxon OID: 2166559009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047475 | Gp0052407 | Ga0010968
• Sample Name: Human fecal microbial communities from France, for comparison studies - Human3 (F2-w 0943)
• Sequencing Status: Permanent Draft
• Sequencing Center: 454 Life Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9266757
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Environmental And Host-Associated → Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: St. Chamond, France
• Coordinates
  • Lat. (^o): 45.460129
  • Long. (^o): 4.495284
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080673	Metagenome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
BAAY01017054	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	939

Sequences

Scaffold ID	Protein ID	Family	Sequence
BAAY01017054	Human3-_00125250	F080673	LATIEINMDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDIIEILIADKKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDYIQTVEKRRVVFEITGHRMDDNKERIRFYVCLIYG