2156126007: Estuarine microbial communities from Columbia river, CM, sample from South Channel ETM site, CRE-ETM-794-796

Overview

Basic Information

• IMG/M Taxon OID: 2156126007
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047387 | Gp0052365 | Ga0010916
• Sample Name: Estuarine microbial communities from Columbia river, CM, sample from South Channel ETM site, CRE-ETM-794-796
• Sequencing Status: Permanent Draft
• Sequencing Center: University of South Carolina
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26015515
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine And Estuarine Microbial Communities From Columbia River Coastal Margin
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → estuary → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Columbia River estuary, South Channel ETM site near Astoria (OR)
• Coordinates
  • Lat. (^o): 46.201
  • Long. (^o): -123.821
  • Alt. (m): N/A
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022191	Metagenome	215	N
F042904	Metagenome / Metatranscriptome	157	Y
F043358	Metagenome / Metatranscriptome	156	Y
F087745	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
GZIBSPL01A53KL	Not Available	509
GZIBSPL01A9EL9	Not Available	530
GZIBSPL01AJ48T	Not Available	509
GZIBSPL01ASJ56	All Organisms → Viruses	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
GZIBSPL01A53KL	GZIBSPL01_0423.00000210	F087745	MSDTTVLLQPVGIVHTPKDLKELEAYIGKFHGGEAIAAFTCAWMAWNLCAKLTNPEGRKADEHA
GZIBSPL01A9EL9	GZIBSPL01_0570.00000040	F022191	HDDLAAMGGRRTHRKKLVNDLAVATLEGRGLGLKKHHRLGYVTEEDKRLFQRIVGITVEEFNQRLIGKLDNLADRIVDRMLDTVEDTPLNSLGFNLAVAIDKRQRLAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKTPCRRFSGACGAA
GZIBSPL01AJ48T	GZIBSPL01_0333.00000160	F042904	MDSKQTVLEGIIEEVATDLYNKWSAALPEHERNQEAFSALSSNAHETTFFVIQNFMDRFNQAAEELKINDSHR
GZIBSPL01ASJ56	GZIBSPL01_0922.00000090	F043358	MKVYDYRIVEDLNLKTLKPHFLIQYYHLTEKKYHLYSNDTFQTLQEAQEAIRLIRK