2156126005: Marine Trichodesmium cyanobacterial communities from the Bermuda Atlantic Time-Series

Overview

Basic Information

• IMG/M Taxon OID: 2156126005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0064468 | Gp0052361 | Ga0026255
• Sample Name: Marine Trichodesmium cyanobacterial communities from the Bermuda Atlantic Time-Series
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131475334
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Trichodesmium Cyanobacterial Communities From The Bermuda Atlantic Time-Series
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Trichodesmium Cyanobacterial Communities From The Bermuda Atlantic Time-Series

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 25.5
  • Long. (^o): -67.3
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032301	Metagenome / Metatranscriptome	180	N
F047103	Metagenome / Metatranscriptome	150	Y
F059484	Metagenome / Metatranscriptome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
TCCM__contig04018	Not Available	961
TCCM__contig04349	Not Available	912
TCCM__contig06489	Not Available	684

Sequences

Scaffold ID	Protein ID	Family	Sequence
TCCM__contig04018	TCCM_0018.00000590	F047103	MHILDQIWPFLGPKILIFMGVSKSFGTNITENHFGNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
TCCM__contig04349	TCCM_0349.00000250	F032301	VASKLSPQQADGFFYQSDMKIREKGKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCCNRRYGHTFQNSA
TCCM__contig06489	TCCM_0489.00000460	F059484	VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSEYVYERWVQQIFDHVLVARSWVSAKKWGPLAKLLGVTKKCISQNLRI