2156126001: Compost microbial communities from Sao Paulo Zoo, Brazil - C5

Overview

Basic Information

• IMG/M Taxon OID: 2156126001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047180 | Gp0052382 | Ga0010903
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - C5
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Sao Paulo, Virginia Bioinformatics Institute
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 374660292
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010992	Metagenome	296	Y
F020635	Metagenome	223	Y
F034411	Metagenome / Metatranscriptome	175	Y
F038003	Metagenome / Metatranscriptome	167	Y
F072887	Metagenome / Metatranscriptome	121	Y
F089589	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
2157468620	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	516
2157585815	Not Available	523
2157641616	Not Available	531
2158179588	Not Available	510
2158380489	Not Available	505
2158411729	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
2157468620	2157165638	F038003	DVALVPEMTVQPVPDVTTSLLVDQKVPTNSHLTSFRLDLNPPNDLALAGALIEASATPLGFRMRSPWDRLTDVSTYGPSGSEEDDDPSVCWDFSGLGNPSAMRDFMTACDYCLSDCFDGSRSLGDESCGPSRECFHIELGDPSKGNHLGMPEDGDLPRPVPRADIPRELAV
2157585815	2157267055	F034411	TELKAQAYDLLANIEWLQSKLRETNAAIAEETTKQNGSADTNSAS
2157641616	2157315008	F010992	NKSILLLQNVEGSLSDVTVTEVTRQVGLVGINAVTSIGPDLAYVSYGNINLLTLTSTNNSLQHKTLPLSTKIKATMRRVNWKAGYKISLGYWSNRLYVSLPLDNSPFCNTVVVYNFTTEEWYGEWNFSPDINLAIQGFQVVDYIKQQRMHIVSEDGRIWSWMKATMTSSPDRRWKF
2158179588	2157766505	F072887	MDLKCMRCGHDLIIGGNFMLSEVTGTELDEDDDAMVTNASCPHCGASYELYDTPENEKPNYPYWDDMEITVD
2158380489	2157935602	F089589	MATTQKISLWVSDNGDVICANHAGTYLKSSIENKLNAISHKTPLDTWRGYSPELLGGALLVCEVCVPWDSPEHPYNQIKAGA
2158411729	2157962331	F020635	MEFSLKQLSWIVIGALGIGGTGYLSMNSKIDELTTKVAVVHNQVATLTKQLDRIEEKLNNTKN