2149837027: Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 52-1 Below Plume

Overview

Basic Information

• IMG/M Taxon OID: 2149837027
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047147 | Gp0052347 | Ga0010884
• Sample Name: Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 52-1 Below Plume
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43595665
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Subsurface Plume → Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine black smoker biome → black smoker → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.716667
  • Long. (^o): -88.466667
  • Alt. (m): N/A
  • Depth (m): 1300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004471	Metagenome / Metatranscriptome	437	Y
F067833	Metagenome / Metatranscriptome	125	Y
F076161	Metagenome / Metatranscriptome	118	N
F104104	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
CHXX__Locus11409v1rpkm25_35	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	502
CHXX__Locus32v1rpkm604_63	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1095
CHXX__Locus3405v1rpkm68_55	Not Available	647
CHXX__Locus5093v1rpkm57_51	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	549
CHXX__Locus922v1rpkm106_87	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	587

Sequences

Scaffold ID	Protein ID	Family	Sequence
CHXX__Locus11409v1rpkm25_35	CHXX_0928.00000740	F067833	VMMVVIQLVKIKVYGIVAMANVFQQAMYVMAQMNSAMPDGDLTVTMAQMKA
CHXX__Locus32v1rpkm604_63	CHXX_0034.00000020	F076161	MKSINFSSRCPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAADPKEHSNLLSSPTNPDAPTGKPV
CHXX__Locus3405v1rpkm68_55	CHXX_0090.00000600	F004471	GALIELDDSRGSIKAVVNMNGQKLAGQAIKVSFTKIDLAGMKNDKKSKDLREAKENWRFSNNKEAKFRKMCLSRLKKLSSSITVLNIPEGKSDLVKKHIIESGYTVKSIEGSRRPDDKDKPKPSTGYTVAFVELASVEEAIAAVANLHNTWPKKFGTMKNDGYGNARGLVFALGGVKQEQLEKSKA
CHXX__Locus5093v1rpkm57_51	CHXX_0716.00000900	F067833	TVLMKLIVLLLHVKTKVFGIVAMANVFQHHMYVMDHLNSVTQDGLLTVLMAQMKA
CHXX__Locus922v1rpkm106_87	CHXX_0243.00000010	F104104	VQAMGATIVYTMNPKRQPTEVYDLKVLTVVTDCARGGYGQMSDDLKCAVGEGDKEKRGAAGHVTLTFAEGGQLVTSMGHWIELTKIDASVESVMQVAAHNFGGVEAENFRRVYMEQATDADRSAWVQQNCHRYVTQSAPSRMKCRTKF