2149837022: Human fecal microbial communities from the University of Arizona (HMP) - UAf2

Overview

Basic Information

• IMG/M Taxon OID: 2149837022
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047181 | Gp0052357 | Ga0010881
• Sample Name: Human fecal microbial communities from the University of Arizona (HMP) - UAf2
• Sequencing Status: Permanent Draft
• Sequencing Center: Chinese National Human Genome Center, Beijing
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71414456
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:273	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Arizona, USA
• Coordinates
  • Lat. (^o): 32.23
  • Long. (^o): -110.95
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F066905	Metagenome	126	Y
F074899	Metagenome / Metatranscriptome	119	N
F076064	Metagenome	118	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
STU__NODE_12039_len_967_cov_11_899690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1013
STU__NODE_18147_len_2014_cov_13_316286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:273	2060
STU__NODE_37658_len_517_cov_10_315281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	563
STU__NODE_46334_len_889_cov_11_838020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	935
STU__NODE_5209_len_2711_cov_29_897823	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	2757
STU__NODE_798_len_9663_cov_59_361378	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	9709

Sequences

Scaffold ID	Protein ID	Family	Sequence
STU__NODE_12039_len_967_cov_11_899690	STU_0398.00001180	F047125	MDVVLLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS
STU__NODE_18147_len_2014_cov_13_316286	STU_0178.00000800	F066905	MPEESRDCGCGRNNGCGCLGNLFGGCGCGDSSILFFIIIFLLLFCNCGGNR
STU__NODE_37658_len_517_cov_10_315281	STU_0916.00002250	F074899	MSGRKQWNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSS
STU__NODE_46334_len_889_cov_11_838020	STU_0626.00002430	F029444	MDVLGQLTGFELEDLMTWTVSNLQRPFREDFSLKKSGIIAEKGSQIFGCRFVGFDGPKKAAPFFNF
STU__NODE_5209_len_2711_cov_29_897823	STU_0924.00000600	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNETRRDPMPVLKLY
STU__NODE_798_len_9663_cov_59_361378	STU_0744.00000020	F099451	MRIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDEDIIELHKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKDE