2149837019: Human fecal microbial communities from the University of Arizona (HMP) - Em2

Overview

Basic Information

• IMG/M Taxon OID: 2149837019
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047181 | Gp0052401 | Ga0010879
• Sample Name: Human fecal microbial communities from the University of Arizona (HMP) - Em2
• Sequencing Status: Permanent Draft
• Sequencing Center: Chinese National Human Genome Center, Beijing
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24499042
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Bording, Denmark
• Coordinates
  • Lat. (^o): 56.13
  • Long. (^o): 9.24
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051935	Metagenome	143	N
F068941	Metagenome	124	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F078004	Metagenome	117	N
F101192	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
STU__NODE_16412_len_683_cov_13_819912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	711
STU__NODE_1904_len_1185_cov_8_745992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1213
STU__NODE_4744_len_1130_cov_14_295575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1158
STU__NODE_6939_len_735_cov_13_976871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	763
STU__NODE_8837_len_726_cov_10_209367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	754

Sequences

Scaffold ID	Protein ID	Family	Sequence
STU__NODE_10987_len_868_cov_9_267282	STU_0011.00000590	F078004	GGLSAVAGSATLDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGAVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
STU__NODE_16412_len_683_cov_13_819912	STU_0078.00000520	F068941	NNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMELTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
STU__NODE_1904_len_1185_cov_8_745992	STU_0635.00000100	F101192	LLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSFTPCGEDTIRRWVSGRYQIALRFNRYDICLGVEEEIDG
STU__NODE_4744_len_1130_cov_14_295575	STU_0061.00000460	F070133	TGAQASTDNVSMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLTLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
STU__NODE_6939_len_735_cov_13_976871	STU_0856.00000310	F051935	TLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDSTYIYFDFVDENQTEWELVLNLSTVYVSYFRMIYNAEGYGTTEIVFNYDHGMKFQFDAPFYFRLSYDVDPAERYSFVVEDFDLATCPLSMQDFFVPAVVSCGEEGAGLYIMAKQGIRPILVLADGEMIEAIPQKEKLDWTIVYYQGNYLFIETENCKMEE
STU__NODE_8837_len_726_cov_10_209367	STU_0351.00000620	F072366	QQGKRLPVYRYLREAWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRTKKRFLWQICYYVNTWATFYYIFGREITQENVEQWKKTLFKEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSYFDDAMTWYRDNGRKLLEAENKTNN