2149837018: Human fecal microbial communities from the University of Arizona (HMP) - Em1

Overview

Basic Information

• IMG/M Taxon OID: 2149837018
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047181 | Gp0052354 | Ga0010878
• Sample Name: Human fecal microbial communities from the University of Arizona (HMP) - Em1
• Sequencing Status: Permanent Draft
• Sequencing Center: Chinese National Human Genome Center, Beijing
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18920902
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Bording, Denmark
• Coordinates
  • Lat. (^o): 56.13
  • Long. (^o): 9.24
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F067844	Metagenome	125	N
F090513	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
STU__NODE_10381_len_662_cov_8_090634	Not Available	690
STU__NODE_12424_len_686_cov_13_258018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	714
STU__NODE_5850_len_562_cov_26_049822	All Organisms → cellular organisms → Bacteria	590

Sequences

Scaffold ID	Protein ID	Family	Sequence
STU__NODE_10381_len_662_cov_8_090634	STU_0980.00000620	F042936	LRQGPFCCVRLMGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
STU__NODE_12424_len_686_cov_13_258018	STU_0652.00000530	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVENKNGTKAVLQGWAAAFVPYMLSFT
STU__NODE_5850_len_562_cov_26_049822	STU_0173.00000250	F067844	MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGAAVITPQ