2149837017: Human fecal microbial communities from the University of Arizona (HMP) - Ef3

Overview

Basic Information

• IMG/M Taxon OID: 2149837017
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047181 | Gp0052352 | Ga0024836
• Sample Name: Human fecal microbial communities from the University of Arizona (HMP) - Ef3
• Sequencing Status: Permanent Draft
• Sequencing Center: Chinese National Human Genome Center, Beijing
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12609759
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces longisporoflavus	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Bording, Denmark
• Coordinates
  • Lat. (^o): 56.13
  • Long. (^o): 9.24
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F089005	Metagenome	109	N
F094005	Metagenome / Metatranscriptome	106	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
STU__NODE_14731_len_494_cov_10_779352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	522
STU__NODE_15300_len_1064_cov_15_426692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1092
STU__NODE_4710_len_13459_cov_24_038710	All Organisms → cellular organisms → Bacteria	13487
STU__NODE_6560_len_1609_cov_24_926041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces longisporoflavus	1637
STU__NODE_6981_len_1674_cov_21_643967	Not Available	1702

Sequences

Scaffold ID	Protein ID	Family	Sequence
STU__NODE_14731_len_494_cov_10_779352	STU_0398.00000430	F089005	LTKSKQCSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQELRI
STU__NODE_15300_len_1064_cov_15_426692	STU_0763.00000400	F105375	MKNNETFQTTQHLDKLVTNLGLQIQGLFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
STU__NODE_4710_len_13459_cov_24_038710	STU_0105.00000250	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLDGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETFEKVITLDKKLKKLIEKLNE
STU__NODE_6560_len_1609_cov_24_926041	STU_0630.00000300	F032312	MARIKDYDEDLSAPKLLKERARDNKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVVWFIIFLYGLVS
STU__NODE_6981_len_1674_cov_21_643967	STU_0941.00000350	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNIPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR