2140918012: Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from flow sorted anaerobic no nitrate

Overview

Basic Information

• IMG/M Taxon OID: 2140918012
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0060820 | Gp0051515 | Ga0026320
• Sample Name: Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from flow sorted anaerobic no nitrate
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 47869084
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Lake Washington, Seattle
• Coordinates
  • Lat. (^o): 47.676484
  • Long. (^o): -122.228394
  • Alt. (m): N/A
  • Depth (m): 62

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050936	Metagenome / Metatranscriptome	144	Y
F065431	Metagenome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
contig00868	Not Available	2810
contig03443	Not Available	1012
contig04088	Not Available	894

Sequences

Scaffold ID	Protein ID	Family	Sequence
contig00868	LWFCAn3_00833770	F050936	MELSNDEVSFLNENIVLKDYFYDLLLNIKNSNETKIILCKNSYERRFVHILAISLGLYHSRYGDWSDWFKKYRDYQETVDKIDGQDHYKIVGVKVSTKLLLLSRKDKIHQECK
contig03443	LWFCAn3_00390890	F065431	MVDYCSICLKEETLSDFAEGTTFTEVDDKLYCVNCFEDLGDSIIFCERCCKFGHRNENFDENFVKSLDYDSNVIYYHIKCLFETEKCPICKDYLKNKDCLDVFIDYGCKIEYHKSCVEDKNNIFEFDICEECGISLRVKCESCNHRFMDCYNDNCCNKNGSCYDGRYDGNCSACNW
contig04088	LWFCAn3_00836710	F065431	MNDYCFICSKEYTLSLCAEGEYFTQVNDREYCVNCFEDLGDSIIFCERCCKFEHRNENFDENFVKSLDYNSNVIYYHIKCLFETEKCPICKDYLKNKECVDVFVDYDFNIEYHKSCVEDKNNVFKFDICEYCGISLRVKCESCERRFGDCYNEDCKNYGYDQYEESGRYDGNCSACNW