2140918009: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3

Overview

Basic Information

• IMG/M Taxon OID: 2140918009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063124 | Gp0051911 | Ga0026285
• Sample Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7377069
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → solid layer → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3
  • Alt. (m): N/A
  • Depth (m): .3 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012633	Metagenome / Metatranscriptome	279	Y
F079367	Metagenome	116	Y
F084901	Metagenome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
NODE_10402_length_3164_cov_8.988622	Not Available	3214
NODE_2090_length_2942_cov_7.113528	Not Available	2992
NODE_8994_length_660_cov_5.490909	Not Available	710

Sequences

Scaffold ID	Protein ID	Family	Sequence
NODE_10402_length_3164_cov_8.988622	B3_GZOS_V_00018050	F079367	MPINLDKVAAKIKKMLTRGDVARDAAWYKDNIAWWMGRYETLITTEAEAVVRKAMAKLNQAVALRDEGINLVEQLDRDISEAESEITRLGGAAFIEKSEPMIEELKVYYDNLYESLKRSRPEKVEK
NODE_2090_length_2942_cov_7.113528	B3_GZOS_V_00087980	F084901	METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHMALPICILLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFLPFVRRPKTALIAGYAAFAIYASHLIVDTRKYAIIENVGGYLWNNMVLYVLLLTVIGFLLVQLLRFSDTNKMAEEL
NODE_8994_length_660_cov_5.490909	B3_GZOS_V_00101620	F012633	FGRHAAMGQLLVMLIVPPIVGVVTYIVIRRIWERDENGASEAVTRLDPSAATPAEGTSTDLGNM