2124908011: Human Saliva microbiome from visit number 1 of subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 2124908011
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046822 | Gp0052291 | Ga0010962
• Sample Name: Human Saliva microbiome from visit number 1 of subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Los Alamos National Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90288620
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
Not Available	3
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctWKa2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Saliva Microbial Communities From Los Alamos National Lab, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Saliva → Human Saliva Microbial Communities From Los Alamos National Lab, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: St. Louis, MO
• Coordinates
  • Lat. (^o): 38.646
  • Long. (^o): -90.224
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046432	Metagenome	151	Y
F051211	Metagenome	144	N
F059076	Metagenome	134	N
F071329	Metagenome	122	N
F076191	Metagenome	118	N
F080166	Metagenome	115	N
F081510	Metagenome	114	N
F085820	Metagenome	111	N
F097525	Metagenome	104	N
F101360	Metagenome	102	N
F105378	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
s300_3046847	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	503
s300_3300357	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1083
s300_3528271	Not Available	876
s300_3996197	Not Available	1251
s300_5248716	Not Available	2169
s300_5839352	All Organisms → Viruses → Predicted Viral	2461
s300_5913035	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	796
s300_5918733	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	969
s300_5927026	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11764
s300_5929643	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	596
s300_5930028	All Organisms → Viruses → Predicted Viral	1172
s300_5931656	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	5242
s300_5932667	All Organisms → Viruses → Predicted Viral	3661
s300_5937762	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctWKa2	7563

Sequences

Scaffold ID	Protein ID	Family	Sequence
s300_3046847	s300_00392540	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFPLDDKTLAMIIKELGEAVASFKKV
s300_3300357	s300_00095910	F046432	MQMTENELSEVISKFQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVESELECYREEGFDNLEAIPRKIETLEIPSDAE
s300_3528271	s300_00382280	F080166	VNILANFENYNKVVEQIFELNYQLTLKMEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTVIDEAIDICDPGNKTSPFKRMYSTTGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARY
s300_3996197	s300_01999000	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVANECHFHRTWLTQGVKAIRVVRTHADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPAGLKQRIVLRLADGTEIEKELSDKRKK
s300_5248716	s300_01071180	F105378	MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNQNGEFVRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPL
s300_5839352	s300_00047260	F071329	MRPLYSKGILMLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARSHVEIED
s300_5913035	s300_01488310	F051211	MRVKKAIKVFEKIRDLPYGTSGSNEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEYILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMVPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
s300_5918733	s300_00633870	F059076	GINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYQGLPINNMSILTLTISNVKGDWISSFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGNNTPSVKHGTDNYGVTTAPATVLLKQHGANWAIYADYPNIGSYEFTSGSTAIGKLVNGTWVITLLVGKRDAVNFTELNFNQGGHDDGQGIKDNTYKAGIENFLKKLE
s300_5927026	s300_00752080	F081510	MKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLVGYGYSVYAGVKSGKKLEATKAKYEAKDAAGEEYTRMEVVKDVAKDVAIPVAVATASTAAIVLGFAIQTNRLKAVSSALAIVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYVSDDPDYNESYIKEAETYLVNRMMKKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDIKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN
s300_5929643	s300_01381500	F033081	QDPKPVFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPAGWATGAAWTVGMTGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRAGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYN
s300_5930028	s300_00492270	F101360	VSKENALRRAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGMQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRDLISTGDISLLMIEGGDA
s300_5931656	s300_00625470	F105380	MEGRQTQYNINLADLDDQISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK
s300_5932667	s300_00234730	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAKQHIDENDHHYENPMIYIRSAHDNRELKDVVHLLILAGGNEIPSNHYGVLRDA
s300_5937762	s300_00393690	F081510	MKLPNMNTIKVAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPLETKSVEVDGKEIEVESIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKVGMITFAEVLDALGFEVPKAALPFGWTDGDGFFLEWDTHEVWNDDKQEYEAQLYVRWKTPRNLYATTNFKDLMPKKTRKELN