2100351001: Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from low methane PC12-247-20cm

Overview

Basic Information

• IMG/M Taxon OID: 2100351001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046158 | Gp0051725 | Ga0026450
• Sample Name: Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from low methane PC12-247-20cm
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 312796620
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0678
  • Long. (^o): -145.54687
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000057	Metagenome / Metatranscriptome	3033	Y
F004192	Metagenome / Metatranscriptome	449	Y
F020359	Metagenome / Metatranscriptome	224	Y
F032659	Metagenome / Metatranscriptome	179	Y
F032661	Metagenome	179	Y
F078733	Metagenome	116	Y
F095493	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ASLM20b_contig00620	Not Available	704
ASLM20b_GJMWM0N02I1WLC	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	521
ASLM20b_GJMWM0N02INPK4	Not Available	525
ASLM20b_GM71RDO02GML28	Not Available	524
ASLM20b_GM71RDO02GYSXM	Not Available	519
ASLM20b_GM71RDO02GZXGO	Not Available	521
ASLM20b_GM71RDO02INIQL	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	537
ASLM20b_GM71RDO02IW3GQ	Not Available	513
ASLM20b_GM71RDO02IZVWX	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
ASLM20b_contig00620	ASLM20b_04567750	F078733	MGGLIHKFGLEFCLTSLEAQHSDYKNTIETKIRREEGVVYAEFSKGHPDIVAVEYDPSITTPDAIYKKIKRLNGGINRKVFL
ASLM20b_GJMWM0N02I1WLC	ASLM20b_05349080	F032661	MAENRKVKRRGYKTHTNFPAIDHRGNFIMSERRHRPTRRVCDVYAEDVDLPTMFLGIKKQ
ASLM20b_GJMWM0N02INPK4	ASLM20b_05435770	F004192	MKNDFNEWMASIGNIYYADNELMSHAFEKLDNYEEVQCTKLHKI
ASLM20b_GM71RDO02GML28	ASLM20b_00809630	F020359	MAVSKRTGGRKAPEEFWSKVLAAPKVKRILEKRGFSPEAFQRDYEADTSRGSRTPKRPSRSQIDAVEAFQRSGDFEALKRALSTDSSAVANSTLRRVVQFKALGGVKTVRRQSGA
ASLM20b_GM71RDO02GYSXM	ASLM20b_05215780	F020359	MAAQRKSGKKTSEEFWSKVLAAPKVKRILEKRGFDTEAFRRDYEADTSRGPRAPKRPSKQQMDAVEAFQRNGDFDALKSSLATESAAVANSALRRVLQFKA
ASLM20b_GM71RDO02GZXGO	ASLM20b_05590150	F000057	MASKLNSEFNYRYLVQGETVWEKIKTLKGFLEGRIRAAA
ASLM20b_GM71RDO02INIQL	ASLM20b_06948610	F032661	MPERRNVKRRRYKAHTYFPAIDHQGEFIVSDRRNLTTRRVCDVSVDDVDIPTMFLGINKQ
ASLM20b_GM71RDO02IW3GQ	ASLM20b_01174790	F095493	MKMKKWLRSVVPDLFLAAVVALVVTLAMNQLDGAETVRIRSDARGAAEDGLTLDERIDIFDGSIRRSTLLHLPALIALSGVVVGLTCRNRRWAWLTAIGSILPAVIMGVAFFADRPLPASFLVTAYSTLAVLMALAGSAFRQRFALARVPRG
ASLM20b_GM71RDO02IZVWX	ASLM20b_02196280	F032659	PEIAETKDEKKHVRENVLPTGKIEPETMQGRADVGDMPIAENLGTLARKVLSSSRHAQSRELARVVLDLLARRSGAK