2088090031: Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)

Overview

Basic Information

• IMG/M Taxon OID: 2088090031
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063342 | Gp0052015 | Ga0025565
• Sample Name: Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120376854
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Brackish Water Microbial Communities From Lake Sakinaw,Canada
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water → Brackish Water Microbial Communities From Lake Sakinaw,Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → brackish water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Sakinaw Lake (SAK), BC, Canada
• Coordinates
  • Lat. (^o): 49.682207
  • Long. (^o): -124.005217
  • Alt. (m): N/A
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F002028	Metagenome / Metatranscriptome	602	Y
F035622	Metagenome / Metatranscriptome	171	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SaLa_GLZXY3L01B4VV6	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	507
SaLa_GLZXY3L01CSVQO	Not Available	566
SaLa_GLZXY3L01DLX4M	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
SaLa_GLZXY3L01B4VV6	SaLa_00515450	F002028	LMFDPNRIRMLTTPYEDSIDQERSEVEAQNKNLLTDTDFPAPNKEQKALYKDYSAEYNNHAVLKNAYRSDFTVAGGKTPPAKTTNDLPMGDKSPMSKIKLPPKPATGNKPRG
SaLa_GLZXY3L01CSVQO	SaLa_00428920	F035622	MVARKGSCGKKPRVGKVGDPKPSRGGRGLGCGRGRKRK
SaLa_GLZXY3L01DLX4M	SaLa_01025810	F001055	MGTKSMRHIVEATVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCEAARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRARCAALSGNMRDLVSIKAAFTATGDASCYDVTMQSEDEGIDERSWATSFTFDI