2088090024: Sample MXSH

Overview

Basic Information

• IMG/M Taxon OID: 2088090024
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063147 | Gp0051996 | Ga0011112
• Sample Name: Sample MXSH
• Sequencing Status: Permanent Draft
• Sequencing Center: National Research Council of Canada
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90948594
• Sequencing Scaffolds: 1
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium WCE2008	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Rumen Microbial Communities Of Musk Oxen From Alaska
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Stomach → Unclassified → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Fairbanks, Alaska
• Coordinates
  • Lat. (^o): 64.880776
  • Long. (^o): -147.869984
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F076635	Metagenome / Metatranscriptome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MXSH_contig02461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium WCE2008	5274

Sequences

Scaffold ID	Protein ID	Family	Sequence
MXSH_contig02461	MXSH_01977330	F076635	MIKRGTKVRVIKMDDAGGGFGWQAKQLNGRIFTVRYMDATKQIHLEETGIALIPGGGSV
MXSH_contig55613	MXSH_00079100	F012184	TEGFVKVAVATALAKDTKAHKAFNAEAAIAEYKAYEAEVALREAEKANKPVKAKGPNPEAQARRDELDAKIGALPSFTEYTATDILNALSGQVAENVTVMAVGSSAKRLVEKGVLTVGNREGDKKSYYTKA