2088090023: Sample MXFH

Overview

Basic Information

• IMG/M Taxon OID: 2088090023
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063147 | Gp0051089 | Ga0011111
• Sample Name: Sample MXFH
• Sequencing Status: Permanent Draft
• Sequencing Center: National Research Council of Canada
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 86883302
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Rumen Microbial Communities Of Musk Oxen From Alaska
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Midgut → Unclassified → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Fairbanks, Alaska
• Coordinates
  • Lat. (^o): 64.880776
  • Long. (^o): -147.869984
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015548	Metagenome / Metatranscriptome	254	Y
F022112	Metagenome / Metatranscriptome	216	Y
F067245	Metagenome / Metatranscriptome	126	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MXFH_Contig11327	Not Available	559
MXFH_Contig5371	Not Available	521
MXFH_Contig56201	Not Available	863

Sequences

Scaffold ID	Protein ID	Family	Sequence
MXFH_Contig11327	MXFH_01224940	F022112	TINIKYIIIYKNMNKFEKDILSEINSFRENPKSIQHQIEVLGKGISRLRAKDPFLKEIEDFIRTIDRIPKMRPLALNKSLTQVAREEVKKYCRNESAYNCYLTGNQLKGIVPSGFLAQNAALIADSGADEAETVVPKLLLNKADKEKKGKQMLCTPEYTQIGIASKEFEGENYYVIVFCKIMILVK
MXFH_Contig5371	MXFH_01461460	F015548	XPIPCVPCLPRLKDIIGIDSEKAKERVPKIVVFLIVILPGYPNIPPEILTKSNFCTPSLMDGRDLLSEICPSWNPKSGLKPILEGFLPFLSKVINAKGYKFYGMFHLGATYNLKNFDNMIVGK
MXFH_Contig56201	MXFH_00551850	F067245	LHFNSVDWVRTGITFNKDIIKDQTDVNCPQFDIYCILEDLIQFYTLKSGWKNCFRNENHSLKNGDNVTITLKNGELRYAVNDEDLGGFIKVDLCDKKEMYLLVHTRNEKV