2084038005: Acid Mine Drainage metagenome from Dabaoshan

Overview

Basic Information

• IMG/M Taxon OID: 2084038005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046239 | Gp0051832 | Ga0010914
• Sample Name: Acid Mine Drainage metagenome from Dabaoshan
• Sequencing Status: Permanent Draft
• Sequencing Center: Sun Yat-Sen University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11409966
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Acid Mine Drainage Microbial Communities From Yunfu, Dabaoshan, And Foukou, China, Of Pyrites, Lead-Zinc Tailings, And Polymetallic Ore
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Acid Mine Drainage → Acid Mine Drainage Microbial Communities From Yunfu, Dabaoshan, And Foukou, China, Of Pyrites, Lead-Zinc Tailings, And Polymetallic Ore

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → acid mine drainage → acidic water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Shaoguan,China
• Coordinates
  • Lat. (^o): 24.61435
  • Long. (^o): 113.6714
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042121	Metagenome	158	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
DBS_contig16778	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1034

Sequences

Scaffold ID	Protein ID	Family	Sequence
DBS_contig16778	DBS_00034920	F042121	MKESVSTFPVKRRRRSSAEVAALLSAFEQSGQSIRDFCRQHQMQVSSFSSLHRRHAGKHSSARSLPTAEHHATATTAFFPVEIVEDRRMSTVAVKSSGLIVEMAGGIRITVERDFDGLTLRHLMAVLCEA