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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2077657024 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045212 | Gp0051965 | Ga0026330 |
| Sample Name | Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - OSP_C |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 27950878 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 11 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 8 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → spring water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | One Hundred Springs Plain, Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.7315 | Long. (o) | -110.711389 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F061983 | Metagenome / Metatranscriptome | 131 | Y |
| F075084 | Metagenome / Metatranscriptome | 119 | N |
| F076264 | Metagenome / Metatranscriptome | 118 | Y |
| F077499 | Metagenome / Metatranscriptome | 117 | Y |
| F077502 | Metagenome / Metatranscriptome | 117 | N |
| F080245 | Metagenome | 115 | N |
| F083455 | Metagenome / Metatranscriptome | 113 | Y |
| F085906 | Metagenome / Metatranscriptome | 111 | N |
| F087442 | Metagenome / Metatranscriptome | 110 | N |
| F087445 | Metagenome / Metatranscriptome | 110 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| OSPC_contig01644 | All Organisms → Viruses → Predicted Viral | 1190 | Open in IMG/M |
| OSPC_contig01720 | Not Available | 1155 | Open in IMG/M |
| OSPC_contig02551 | Not Available | 884 | Open in IMG/M |
| OSPC_contig02825 | Not Available | 836 | Open in IMG/M |
| OSPC_contig04178 | Not Available | 645 | Open in IMG/M |
| OSPC_GN81VBF02FOJU9 | Not Available | 511 | Open in IMG/M |
| OSPC_GN81VBF02G98HG | Not Available | 510 | Open in IMG/M |
| OSPC_GN81VBF02H9IZL | Not Available | 508 | Open in IMG/M |
| OSPC_GN81VBF02JBMWN | Not Available | 509 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| OSPC_contig01644 | OSPC_00049790 | F087442 | GETRMMREGLVKAGNLVVDCKPCYVAGTGFTKDDIYVISEGTVVFKWYDKIAVVVVGEEGMKVNLLDIVDVRFLVERNENCLATRL |
| OSPC_contig01644 | OSPC_00049800 | F080245 | MIFVWSARVVIPGFRDEVFVSPALINRYIELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT |
| OSPC_contig01644 | OSPC_00049810 | F075084 | VRPCRKDLCLLYSLGADYAKLIDFTNQNFQGKLFRAGARAMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYTQYNGVPCDLVSVFTVETTYADILHMIVNYNSENVSKVLT |
| OSPC_contig01720 | OSPC_00163040 | F077502 | VVTMTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEIKEQVDAYFLKKLNDIYDKYYE |
| OSPC_contig02551 | OSPC_00595970 | F083455 | MDLFSYQLGISSLWAKDFIVALLGIALAVSLTLANKKGESLLIQSTMMMPVAFAIHALPHINYISLNTIFDYGIIAIGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLEFALNSVLITIVFALITYIPPVDDIL |
| OSPC_contig02825 | OSPC_00268080 | F077499 | ESLKPVSYPNITNAEIIFVLTISIPIGSHPESDTPMEEKMKFLSTYTPLEFQKLYYMKTIDKALDILKHLLYTREDNVLFEIANKINSLYDVKELINKVKDVECAKDLKTLNITLTEAKRYIYPDISLSRYASSQAKQLGIKKYEYYARLFECYVETDKNLDMLTLFRVSNLVFNFLRINNLSHIIKKMQFKDENINRIAEKIKQRVKITLDAMTDRKPIEADINVLNSITIRIKEIDLG |
| OSPC_contig04178 | OSPC_00624770 | F076264 | MSAISSAIQSMVNGLQSLFVALIDVFSNAVNAIGNTLASLANPIGYLIGVLAVFGSLISIIYYVFRGKGGVGGLVSGIRSVFTSFF |
| OSPC_GN81VBF02FOJU9 | OSPC_00123760 | F075084 | LIYSLGVDYAKLMDFTSQNPTGKLFRRAGVAMVYARRLSASWYGYDTGVLLKRSLRRILRWSINYCRVMRGLGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRIIHMIANYNSETVSKLLTKMTEECSTYEVRG |
| OSPC_GN81VBF02G98HG | OSPC_00258000 | F061983 | EGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFNCYYGDVIDVEKLKDVGAIVVKESDGEPLRTMKTLVAKWYNKKLVEEEKAYEVCNTFVT |
| OSPC_GN81VBF02H9IZL | OSPC_00606120 | F087445 | KRLMLALDTIQEYQNLRSKFDNLFNVFAMNSPKVKEVMENAKKNRKPLDRLADMFMDLIETMLKSKAMTLTDEDREKLREKVREMIESEG |
| OSPC_GN81VBF02JBMWN | OSPC_00461760 | F085906 | NLTSFLENFEVEFQSQVRQIGDGIYEEIGTLKVYLPGEDGGRVMGEYNVHAVIYDMVQVIRLDGRYYDVSDDRWHTVSLLLVFKYNELLDETFLQFGNGVMIYGQRARRPYW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |