2077657008: Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7887

Overview

Basic Information

• IMG/M Taxon OID: 2077657008
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046183 | Gp0051758 | Ga0026431
• Sample Name: Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7887
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73827693
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → unclassified Treponema → Treponema sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: University of Illinois Dairy Farm in Urbana, IL
• Coordinates
  • Lat. (^o): 40.0886
  • Long. (^o): -88.2202
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036964	Metagenome / Metatranscriptome	169	Y
F043727	Metagenome	155	Y
F066313	Metagenome	126	Y
F093002	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BRPC1_contig00370	Not Available	1462
BRPC1_contig00636	Not Available	1189
BRPC1_contig01843	Not Available	707
BRPC1_contig01885	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → unclassified Treponema → Treponema sp.	716

Sequences

Scaffold ID	Protein ID	Family	Sequence
BRPC1_contig00370	BRPC1_01259690	F093002	MTEQEFDTQVWRRFDVVTTDTGIETTVMNVCFTTRSVRIYVKNAPPEWLPCKRIEKHTTRKGDTADEGTIIEELHNKLLAAEDRIVGLKNERQQLADKIGKNYLADILHAVNMIKEGMTEKKAKLAKVDSALTSIESILQRVNE
BRPC1_contig00636	BRPC1_00158280	F066313	MKKKIKNWMGKNNMTFSAIAGETFTNAEVVYTHIGLVVFLIVLGLAGNY
BRPC1_contig01843	BRPC1_01385490	F043727	MTNKEAIDRWAEQIIPAVFKAEDALQKAKPEWKEKLKNVNGENGALLARLYCEEIATIIVTQAADYEPDGTIPYDNDPCNVELPDDETTD
BRPC1_contig01885	BRPC1_01095920	F036964	MINFLKIFFPGLMVTGALGSLILNIVVNRQDWPVSLQWLGATFLYTALLFRNK