2070309007: EF-deduplicated data

Overview

Basic Information

• IMG/M Taxon OID: 2070309007
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045482 | Gp0051729 | Ga0011088
• Sample Name: EF-deduplicated data
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Illinois, Urbana-Champaign
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90734374
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Viral Communities From Wastewater Treatment Facility In Singapore
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore: Singapore
• Coordinates
  • Lat. (^o): 1.332
  • Long. (^o): 103.756
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F002371	Metagenome / Metatranscriptome	566	Y
F024534	Metagenome / Metatranscriptome	205	Y
F029893	Metagenome / Metatranscriptome	187	Y
F049316	Metagenome / Metatranscriptome	147	N
F078624	Metagenome / Metatranscriptome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EF_consensus_for_cluster_18824	Not Available	516
EF_consensus_for_cluster_19209	Not Available	510
EF_consensus_for_cluster_30291	Not Available	504
EF_consensus_for_cluster_36879	Not Available	501
EF_consensus_for_cluster_40518	Not Available	504
EF_consensus_for_cluster_9978	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	529
EF_singleton_cluster_11367	Not Available	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
EF_consensus_for_cluster_18824	EF_00404250	F000388	MKVIKVTKEYFQTEDEXGFILRAFGKRISVEDMQKIVDANEKLXKEL
EF_consensus_for_cluster_19209	EF_01858300	F029893	DSVSVAANSVSANVVAGQLYEFVPTGTKVTLSCTGSNTGLRATLIANIPVMNDQAINLQNRFPIIPDDIVFQGAVRACRIVLTARNTTAGALTFFWRIDVN
EF_consensus_for_cluster_30291	EF_00122140	F078624	MKLCIHVRPRDDGQGWAVDVFDGRRAWTKTHLGESPLNKVEAHRLAHKLRDPKFNTARTK
EF_consensus_for_cluster_36879	EF_02071440	F049316	VLDREADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSEVNEFLDKLYWQYKIDNPHIFTAIQFGNLADAAMMIAEAVKKLPQEPEAQKLIDEGMRLISILSK
EF_consensus_for_cluster_40518	EF_00093220	F029893	MQDSVSVAANSVSANVVAGQLYEFVPTGTKVTLSCTGSNTGLRATLIANIPVMNDQAINLQNRFPIIPDDIVFQGAVRACRIVLTARNTTAGALTFFW
EF_consensus_for_cluster_9978	EF_00934280	F024534	IDRINALPDVFMLASLVQFKYVQTISEPNDVXFVVGLAGGHQXFGEPSQYDKFMDKYLTWLEMRK
EF_singleton_cluster_11367	EF_02445650	F002371	VLGVKKETRGGTRQGSGAKPKYNEQTKTVAFRCPLSKVDELKLIVKSKLSEWSVK