2070309006: AS-dedpulicated data

Overview

Basic Information

• IMG/M Taxon OID: 2070309006
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045482 | Gp0051728 | Ga0011087
• Sample Name: AS-dedpulicated data
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Illinois, Urbana-Champaign
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63808837
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Viral Communities From Wastewater Treatment Facility In Singapore
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore: Singapore
• Coordinates
  • Lat. (^o): 1.332
  • Long. (^o): 103.756
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F024534	Metagenome / Metatranscriptome	205	Y
F035220	Metagenome / Metatranscriptome	172	N
F037226	Metagenome / Metatranscriptome	168	Y
F043390	Metagenome / Metatranscriptome	156	N
F060712	Metagenome / Metatranscriptome	132	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
AS_consensus_for_cluster_12251	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	520
AS_consensus_for_cluster_1759	Not Available	553
AS_consensus_for_cluster_5075	Not Available	536
AS_singleton_cluster_11353	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	520
AS_singleton_cluster_2293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	546
AS_singleton_cluster_26020	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	502
AS_singleton_cluster_5915	Not Available	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
AS_consensus_for_cluster_12251	AS_01995420	F024534	VNQQFIDRIKALPDVFMLASLVQFKYVQTISEPNDVNFVXGLAGGYEVFGKTEQYKLFVDKYLTWLENR
AS_consensus_for_cluster_1759	AS_02006890	F037226	XXXNNEPKVVVSDLFIDIYKNFNVVTQVDRMKQLSKKELYLLLTCCFDKHSDDDPVVKHNLLEFREEAMKIYAIQNDEETTDEVLLDLIXETGDKYIETDNIVDSKGNSLSEPLTKQEVRDAKIDIIDTDGN
AS_consensus_for_cluster_5075	AS_01831660	F000388	MKVIKVMKEYFQTEDEKVYFFEPLEKXISVEDMQKIVDANGKLVKELKDAXILN
AS_singleton_cluster_11353	AS_01451660	F024534	MKQQFIDRIDALPDVFMLASLVQFKYVQTISEPNDVNFVVGLAGGYEVFGTPEHYDKFIDKYLTWLETRKP
AS_singleton_cluster_2293	AS_01301610	F043390	MIMGYMVKNEDSQKVITLTLTAEQLEVIDGALEMYCMGLAEQNDPHLKYATNAHEAIYNVLESNFGVEA
AS_singleton_cluster_26020	AS_01496850	F060712	ITTLTDIANRALQVPGTRTTVTDAELAGNTTNEAIQINLVADSIRRQLIRMAPWDSALKTANLVYISSTPGTPENTSAATTLWQPGQPSPPWAYEYQYPVDCLRACWIIP
AS_singleton_cluster_5915	AS_00145980	F035220	MDYYVPAGTIYLLHVPSLAWVDAKDWGFIEFEGSGPWRWMSGRDAFETTYGWYGNIAPLARNTHGSIVGYTDTDRYSHLV