2051774008: Saline water microbial communities from Great Salt Lake, Utah, sample from North Arm Rozel Point

Overview

Basic Information

• IMG/M Taxon OID: 2051774008
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0060782 | Gp0051443 | Ga0026312
• Sample Name: Saline water microbial communities from Great Salt Lake, Utah, sample from North Arm Rozel Point
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 99427575
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Water Microbial Communities From Great Salt Lake, Utah
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From Great Salt Lake, Utah

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Great Salt Lake
• Coordinates
  • Lat. (^o): 41.454358
  • Long. (^o): -112.666397
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062489	Metagenome	130	Y
F076468	Metagenome	118	N
F088354	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
GSLNARP_contig00043	All Organisms → Viruses	610
GSLNARP_GFPJP1N02IO9G8	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
GSLNARP_contig00043	GSLNARP_01377800	F088354	MTDTDTPRAQLDVDRFETATVNANGQIYLGRDLQGVKVHVAIEIVTDDD
GSLNARP_contig13753	GSLNARP_00015360	F076468	MTNLEEIDTKAVWLSGRYWRREHKVVHIDGDCDQLDACDNPRGPVDPDVLAGDMSVCKRCDPNEPDRYGGTTGTSLAHRLRHGDLQDATIDSDSVGGDE
GSLNARP_GFPJP1N02IO9G8	GSLNARP_02232200	F062489	VIRERVAEGPTRRYVYHRLSAGGYERQTQLWRQAKDGWHTTGTEVIEALAIDGGSGGLTIATE