2051223006: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10374

Overview

Basic Information

• IMG/M Taxon OID: 2051223006
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045401 | Gp0051702 | Ga0011002
• Sample Name: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10374
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64033979
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] lactaris	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Orebro University Hospital, Sweden
• Coordinates
  • Lat. (^o): 59.274717
  • Long. (^o): 15.230656
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059106	Metagenome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
mhc6a_MHC6A_contig48237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] lactaris	1206

Sequences

Scaffold ID	Protein ID	Family	Sequence
mhc6a_MHC6A_contig48237	MHC6A_contig48237_metagene_gene_4	F059106	MHAIVWKIRVILLQTFVWIVDLKVRERLIEYLKKDIKYHRVIIGGLV