2051223001: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10369

Overview

Basic Information

• IMG/M Taxon OID: 2051223001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045401 | Gp0051794 | Ga0010939
• Sample Name: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10369
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33333791
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Orebro University Hospital, Sweden
• Coordinates
  • Lat. (^o): 59.274717
  • Long. (^o): 15.230656
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067720	Metagenome	125	Y
F099451	Metagenome	103	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
mc15b_MC15B_contig01274	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	766
mc15b_MC15B_contig10579	Not Available	1117
mc15b_MC15B_contig22203	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	877

Sequences

Scaffold ID	Protein ID	Family	Sequence
mc15b_MC15B_contig01274	MC15B_contig01274_metagene_gene_1	F105374	MKKRVTLLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
mc15b_MC15B_contig10579	MC15B_contig10579_metagene_gene_4	F067720	MASTTYRHLGDVTKMYAAQKQFRDITKMVCACLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAACGGGSCGAARCAART
mc15b_MC15B_contig22203	MC15B_contig22203_metagene_gene_2	F099451	MEIKNVGQLRKIIENLSDDYEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSCKVLCLGVTSNE