2049941000: Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - 900 MB Assembly

Overview

Basic Information

• IMG/M Taxon OID: 2049941000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0059810 | Gp0051627 | Ga0011138
• Sample Name: Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - 900 MB Assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 925521509
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	2
All Organisms → cellular organisms → Bacteria	2
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: University of Illinois at Urbana - Champaign, Illinois, USA
• Coordinates
  • Lat. (^o): 40.096
  • Long. (^o): -88.2315
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015685	Metagenome / Metatranscriptome	252	Y
F032501	Metagenome / Metatranscriptome	179	Y
F036964	Metagenome / Metatranscriptome	169	Y
F074260	Metagenome / Metatranscriptome	119	Y
F076635	Metagenome / Metatranscriptome	118	Y
F076729	Metagenome / Metatranscriptome	117	Y
F087968	Metagenome / Metatranscriptome	110	Y
F098367	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
900MB_Assembly_NODE_1028372_len_182402_cov_8_373181	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	182452
900MB_Assembly_NODE_1041937_len_84497_cov_4_569890	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	84547
900MB_Assembly_NODE_159263_len_34017_cov_16_693712	All Organisms → cellular organisms → Bacteria	34067
900MB_Assembly_NODE_281337_len_159957_cov_14_314947	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	160007
900MB_Assembly_NODE_295814_len_14416_cov_3_474750	Not Available	14466
900MB_Assembly_NODE_475410_len_5229_cov_1_071333	Not Available	5279
900MB_Assembly_NODE_490094_len_16428_cov_27_263514	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	16478
900MB_Assembly_NODE_522796_len_4981_cov_0_468179	Not Available	5031
900MB_Assembly_NODE_664657_len_97568_cov_15_004192	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	97618
900MB_Assembly_NODE_784033_len_183413_cov_12_034637	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	183463
900MB_Assembly_NODE_871879_len_16183_cov_1_247544	Not Available	16233
900MB_Assembly_NODE_879001_len_36171_cov_0_516049	All Organisms → cellular organisms → Bacteria	36221
900MB_Assembly_NODE_969782_len_63717_cov_5_215625	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	63767
900MB_Assembly_NODE_994481_len_163906_cov_12_139556	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	163956

Sequences

Scaffold ID	Protein ID	Family	Sequence
900MB_Assembly_NODE_1028372_len_182402_cov_8_373181	_900MB_Assembly_7363390	F076635	MIKRGSRVRVVKMDTAGGMDWQAKRLEGKVFTVRFIDSAGMIHLEETGIALIPGVDQFEVVK
900MB_Assembly_NODE_1041937_len_84497_cov_4_569890	_900MB_Assembly_4394380	F076729	MNLTDNEVLKFLKGGPVFLEDICAVYSVTLGEIVDIGYDKF
900MB_Assembly_NODE_159263_len_34017_cov_16_693712	_900MB_Assembly_10330230	F076635	MIKRGAKVRVIKIDDAGGMDWQARQLNGKIFTVRYVDSTGQIHLEETGIALIPGVDQFEVVK
900MB_Assembly_NODE_281337_len_159957_cov_14_314947	_900MB_Assembly_2258850	F015685	MFARVRGKFNRSETLYFKGCPCKKEQLGVDLLNPSKANGAKHILSQNALKTAVQAAKTALADPTERATLEAGFQAQKKYTSLFAYTVAQKYVKPSYGE
900MB_Assembly_NODE_295814_len_14416_cov_3_474750	_900MB_Assembly_10965630	F032501	MKTESEEKDWVKVLYEVILKILTLGFYHVEKHRKS
900MB_Assembly_NODE_475410_len_5229_cov_1_071333	_900MB_Assembly_4756080	F032501	MKQETENESKDWVKVLCEVILKILTLGFYHLEKHKNR
900MB_Assembly_NODE_490094_len_16428_cov_27_263514	_900MB_Assembly_9051670	F076635	MIKRGTKVRVIKRDDAGGGFGWHAKQLNGRIFTVRYMDATKQIHLEETGIALIPGVDQYEIVKENE
900MB_Assembly_NODE_522796_len_4981_cov_0_468179	_900MB_Assembly_9446870	F087968	MKVTKTYARTLYNAGKAVMIIPNKMRTDSFMAVWQTKPDDDPYADFDKLVNAISYYNCSPETGMGLCYYAKEA
900MB_Assembly_NODE_664657_len_97568_cov_15_004192	_900MB_Assembly_9307320	F076635	MIKRGSKVRVVKMDTAGGMDWQAKRLEGKVFTVRYIDSAGMIHLEETGIALLPGVDEFEILK
900MB_Assembly_NODE_784033_len_183413_cov_12_034637	_900MB_Assembly_5866780	F076635	MIKRGSRVRVVKMDTAGGMDWQAKRLEGKVFTVHFIDSAGQIHLEETGIALIPGVDEYEVIR
900MB_Assembly_NODE_871879_len_16183_cov_1_247544	_900MB_Assembly_4447070	F036964	MNVLKMLFPGLMVLGALGSLIVNIIERGDGAVSLQWIGACLLYTALLLRNMS
900MB_Assembly_NODE_879001_len_36171_cov_0_516049	_900MB_Assembly_7358090	F032501	MKTENEEKDWVKVLYEVILKILTLGFYHVEKHRKDK
900MB_Assembly_NODE_969782_len_63717_cov_5_215625	_900MB_Assembly_1012230	F098367	MSDDTFRRLRNYHVRLGTVINELEILEDFTDADYTDIITDIGYCTNLLEQRRERLQRRGRSL
900MB_Assembly_NODE_969782_len_63717_cov_5_215625	_900MB_Assembly_1012650	F074260	MAEKKKQTTKKTAKKPELLPFDELPIQVKRNRRLLYEYIRTGNLPE
900MB_Assembly_NODE_994481_len_163906_cov_12_139556	_900MB_Assembly_8651610	F076635	VKMDTAGGMDWQAKRLEGKVFTVRFIDSAGQIHLEETGIALLPGVDEYEIVK