2044078005: Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL

Overview

Basic Information

• IMG/M Taxon OID: 2044078005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045634 | Gp0051613 | Ga0011097
• Sample Name: Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Illinois, Urbana-Champaign
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18598591
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → bulk soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: UIUC Energy Farm, Urbana, Illinois 61801
• Coordinates
  • Lat. (^o): 40.109
  • Long. (^o): -88.204
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001437	Metagenome / Metatranscriptome	695	Y
F002176	Metagenome	587	Y
F007449	Metagenome / Metatranscriptome	351	Y
F080568	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
PVB_F548DK201DY66L	All Organisms → cellular organisms → Bacteria → Acidobacteria	500
PVB_F5IW0KN15I7Z7K	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	512
PVB_F5IW0KN16JRWJA	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
PVB_F548DK201DY66L	PVB_312060	F002176	ASVNGIGGRYEPEAWRDDPQFEGEPSSREQCRLLDLLGRINYRILSGNRVYVEVGGVVYKTVYGGYWRSVFTGIEHYLLHCEQVSSAVWKEEKSTAVDLPIAYSKGGWTTKGHSLSFILNRDQ
PVB_F548DK201E0ARC	PVB_780540	F080568	VHTYGYAAGSEVPIFSKAYTTAGTLALGTQERCPGDCAGLIRYATTARTSKNHPVYLFNYYHGVVAVGASFDDVGAVQASAYSTYAGLWIAGFSDGATTYNRAGPNGASAVGSLVEPYITHRDLPR
PVB_F5IW0KN15I7Z7K	PVB_521450	F007449	VKDPDAFQWRDIVLTNREILSASLDLFARRIDELRERLGSRDLEADFDAANELYKLLR
PVB_F5IW0KN16JRWJA	PVB_479240	F001437	LDGRVLFRLETADGSPASPSTLKSAVPNWRAGDVISLGHRALRVVGKRDDDADQPPVLVVEEAV