2043231005: Sediment 3

Overview

Basic Information

• IMG/M Taxon OID: 2043231005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045617 | Gp0051648 | Ga0011084
• Sample Name: Sediment 3
• Sequencing Status: Permanent Draft
• Sequencing Center: Soedertoern University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13940132
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Landsort Deep, Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Sweden
• Coordinates
  • Lat. (^o): 58.58333333
  • Long. (^o): 18.23333333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005937	Metagenome / Metatranscriptome	386	Y
F010314	Metagenome / Metatranscriptome	305	Y
F011474	Metagenome / Metatranscriptome	290	N
F041161	Metagenome / Metatranscriptome	160	N

Associated Scaffolds

Scaffold	Taxonomy	Length
sed3_GCH9ZVC01BX6X6	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium	501
sed3_GCH9ZVC01D936Y	Not Available	544
sed3_GCH9ZVC02IBD8Q	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
sed3_GCH9ZVC01BX6X6	sed3_323420	F041161	MYTLQMMGKQVAESVQFADQFLPRATTPKEIWFILKDNLVYKNDPPGIELLQSFPSLMNDNYWGIPGAGDCDCFTIAALACAAVRGIPARAVIVGNSSQAPTHVYCQYLVDGRWIDFD
sed3_GCH9ZVC01D936Y	sed3_440510	F005937	MVMVKADVSISVTQIITIAAMFASILGSYYSLSAKIETNTAEVAKLKYNEKEYTWKAQRQLEAEVRTITLEMRDFMKDLEYLKIDKKKR
sed3_GCH9ZVC01D936Y	sed3_440520	F010314	MENLKIYLLNGTALAISVSEINPILQTVSLLLAIGYTVIQISKKLK
sed3_GCH9ZVC02IBD8Q	sed3_393380	F011474	QQTAFIMKEKIDHLTHFDIVVKEELASCTSAEDMLIVLARNYDLRKPLGGLTKAAFTIGLRTAVGMLRPEVNATANYKKKS