2043231003: Sediment 1

Overview

Basic Information

• IMG/M Taxon OID: 2043231003
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045617 | Gp0051646 | Ga0010906
• Sample Name: Sediment 1
• Sequencing Status: Permanent Draft
• Sequencing Center: Soedertoern University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39942571
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Landsort Deep, Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Sweden
• Coordinates
  • Lat. (^o): 58.58333333
  • Long. (^o): 18.23333333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009954	Metagenome / Metatranscriptome	310	Y
F079994	Metagenome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
sed1_GCH9ZVC02FNKC6	Not Available	503
sed1_GCH9ZVC02HJUWV	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
sed1_GCH9ZVC02FNKC6	sed1_868770	F079994	MEHLQQRLDALKQQEANLLMQLDEVRVLVSAYENTLKENDKGVG
sed1_GCH9ZVC02HJUWV	sed1_1227470	F009954	MDGLKVKVKTSDGQEGTYSLRPKTLVAFENKYNKGFAKLLTEEQRLEHIYFLAWAAMKDSGKVVKPFGDGFLDTLDSVELETDPNSESTETA