2035918007: Coalbed microbial communities from New Mexico, USA - 340

Overview

Basic Information

• IMG/M Taxon OID: 2035918007
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045251 | Gp0051578 | Ga0011014
• Sample Name: Coalbed microbial communities from New Mexico, USA - 340
• Sequencing Status: Permanent Draft
• Sequencing Center: Virginia Polytechnic Institute and State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106389413
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coalbed Water Microbial Communities From New Mexico, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From New Mexico, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → coal mine → underground water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: New Mexico
• Coordinates
  • Lat. (^o): 36.728056
  • Long. (^o): -108.220833
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002196	Metagenome / Metatranscriptome	584	Y
F015738	Metagenome / Metatranscriptome	252	Y
F017851	Metagenome / Metatranscriptome	238	Y
F105430	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Coalbed_GAIGPUK02FXJQE	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	539
Coalbed_GAIGPUK02HJKZ9	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	530
Coalbed_GAIGPUK02IDWRS	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	522
Coalbed_GAIGPUK02JH6Z7	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	555

Sequences

Scaffold ID	Protein ID	Family	Sequence
Coalbed_GAIGPUK02FXJQE	Coalbed2_4493010	F015738	VPESDRPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPESGRIEGMSWCLHFDRPIDHRLVKEDRPPCIEERHGCAGCPESTYRVHRVTDR
Coalbed_GAIGPUK02HJKZ9	Coalbed2_4466020	F017851	VARAILEGRPLRIHAAKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTQKICKILKDEVERMPRETKRALAVAAHLLPADEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Coalbed_GAIGPUK02IDWRS	Coalbed2_4716090	F002196	AQQIHAERHGAHTFLPGTRLSFXEAAKRTGIRSDRQRYYDAIEDLEYEGAIEWDKSARYARGDKHYLITERGLRML
Coalbed_GAIGPUK02JH6Z7	Coalbed2_3721280	F105430	MTSASSQQFFETFPPNVARAILEGRPLRIHAAKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTQRSARS