NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2035918005

2035918005: Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2+



Overview

Basic Information
IMG/M Taxon OID2035918005 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0059646 | Gp0051397 | Ga0026392
Sample NameSoil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2+
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size252083467
Sequencing Scaffolds37
Novel Protein Genes42
Associated Families37

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
Not Available10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium4
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus → Methylococcus capsulatus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Face And Otc Sites In Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biomeresearch facilitysoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationNevada Desert Research Center
CoordinatesLat. (o)36.766667Long. (o)-115.95Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000756Metagenome / Metatranscriptome905Y
F002628Metagenome542Y
F002864Metagenome / Metatranscriptome525Y
F003047Metagenome510Y
F004218Metagenome / Metatranscriptome448Y
F008025Metagenome / Metatranscriptome340Y
F008774Metagenome / Metatranscriptome328Y
F009290Metagenome / Metatranscriptome320Y
F011188Metagenome / Metatranscriptome294Y
F012810Metagenome / Metatranscriptome277Y
F015186Metagenome / Metatranscriptome256Y
F015700Metagenome / Metatranscriptome252Y
F016251Metagenome / Metatranscriptome248Y
F016321Metagenome / Metatranscriptome248Y
F018165Metagenome / Metatranscriptome236Y
F018678Metagenome / Metatranscriptome233Y
F019791Metagenome / Metatranscriptome227Y
F023048Metagenome211Y
F038844Metagenome / Metatranscriptome165Y
F039570Metagenome / Metatranscriptome163Y
F040839Metagenome161Y
F042710Metagenome157N
F044947Metagenome153Y
F051097Metagenome / Metatranscriptome144Y
F056746Metagenome / Metatranscriptome137Y
F059551Metagenome / Metatranscriptome133Y
F059924Metagenome133Y
F062389Metagenome / Metatranscriptome130N
F062444Metagenome130Y
F066523Metagenome / Metatranscriptome126Y
F070937Metagenome / Metatranscriptome122Y
F072963Metagenome120Y
F074187Metagenome / Metatranscriptome120Y
F090030Metagenome / Metatranscriptome108Y
F093266Metagenome / Metatranscriptome106Y
F101832Metagenome102Y
F103859Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
FACENCT_F37DT1O01A57Y1All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium511Open in IMG/M
FACENCT_F37DT1O01A84GRAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria520Open in IMG/M
FACENCT_F37DT1O01AK84CNot Available515Open in IMG/M
FACENCT_F37DT1O01ANVVKNot Available540Open in IMG/M
FACENCT_F37DT1O01B7YPSNot Available543Open in IMG/M
FACENCT_F37DT1O01B87K3Not Available505Open in IMG/M
FACENCT_F37DT1O01BD1L9All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae510Open in IMG/M
FACENCT_F37DT1O01C0T9TAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium501Open in IMG/M
FACENCT_F37DT1O01C172AAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans531Open in IMG/M
FACENCT_F37DT1O01C1GYCAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium530Open in IMG/M
FACENCT_F37DT1O01C4P2JAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium513Open in IMG/M
FACENCT_F37DT1O01C51K6All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium522Open in IMG/M
FACENCT_F37DT1O01CAAICAll Organisms → cellular organisms → Bacteria529Open in IMG/M
FACENCT_F37DT1O01CJ6V4All Organisms → cellular organisms → Bacteria531Open in IMG/M
FACENCT_F37DT1O01CLKE3All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans527Open in IMG/M
FACENCT_F37DT1O01CN7U8All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae519Open in IMG/M
FACENCT_F37DT1O01CP5USNot Available503Open in IMG/M
FACENCT_F37DT1O01CX3PAAll Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus → Methylococcus capsulatus546Open in IMG/M
FACENCT_F37DT1O01D834CNot Available541Open in IMG/M
FACENCT_F37DT1O01D9FPLAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae508Open in IMG/M
FACENCT_F37DT1O01DCX55All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium511Open in IMG/M
FACENCT_F37DT1O01DL36LNot Available580Open in IMG/M
FACENCT_F37DT1O01DN9DAAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria528Open in IMG/M
FACENCT_F37DT1O01DPIUHAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium523Open in IMG/M
FACENCT_F37DT1O01E3ILYAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi514Open in IMG/M
FACENCT_F37DT1O01EALG0All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae510Open in IMG/M
FACENCT_F37DT1O01EBW83All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium511Open in IMG/M
FACENCT_F37DT1O01EIM6QAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium525Open in IMG/M
FACENCT_F37DT1O01EIUTFAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium511Open in IMG/M
FACENCT_F37DT1O01EQBDJAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.523Open in IMG/M
FACENCT_F37DT1O01ER82BNot Available537Open in IMG/M
FACENCT_F37DT1O01EV3WLAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium500Open in IMG/M
FACENCT_FWM8F5N04I11LNAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae515Open in IMG/M
FACENCT_FWM8F5N04I5X0SAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae504Open in IMG/M
FACENCT_FWM8F5N04IIYFVAll Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.503Open in IMG/M
FACENCT_FWM8F5N04IWWMFNot Available503Open in IMG/M
FACENCT_FWM8F5N04JNF4FNot Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
FACENCT_F37DT1O01A57Y1FACENCTE_10532920F023048LKADATHWLTDPEYEVLRYRLEAAHAALVEARRNVRLDE
FACENCT_F37DT1O01A84GRFACENCTE_8514970F003047EINGAYRRLSAATENSASADRSLAGYVRRIRLDNAEAILEAKNERTASLYLDGLLDTDEHRNLEDARAEAELELQHARREVERLHLIVRLLGATEGRQGSA
FACENCT_F37DT1O01AK84CFACENCTE_5455920F059924MQATKYKDLVVLLILLDEVESRSRELAERYTELRAMAEAVSDATDLCDLAM
FACENCT_F37DT1O01ANVVKFACENCTE_8741330F008025VASMAGIGKKIKEAAMKAAKDKASGGKKGKHTGGSESGVDKAMRALKTRLK
FACENCT_F37DT1O01AS3LSFACENCTE_7493850F101832EPHPGMTVRVKEGHWKSKYDGMRGTVERRWGHPDHPALDVRLEDGQLELFWFHELDKA
FACENCT_F37DT1O01ATEE9FACENCTE_3664670F038844VASNEMPQPPYVLLFEEVVPDARPLTILVDDRGAVPLFDSEEKAGAFVASTDFGAGLEPVEVSGAGLVRALESVGDDVDYVAINPPPAGESPMKVRMGGLEELVDALQQSQED
FACENCT_F37DT1O01B7YPSFACENCTE_6157420F062444LLLIRSLSGLRPRFALILALVLLASGFTIPAVAQTDQESDQEGESGETDQSGEVLNEGDNSNQCVAVQPVSNTGNAITDLDIVIQLPTGEQQIKRHDRNYVLDLIDELDLDLEDIGSTIELDPEQAVECAQAVDQAATASDDS
FACENCT_F37DT1O01B87K3FACENCTE_1949280F039570LTLCASVDADVASRAGSGLTTLTPDDLRATARPLELLQRALPEGDHRLGIPVWADAVITATSRATHVEVETTLANLCRDHGVSVLCVYDRDGERDRAGTEHLDLAVARHPDELQESRLVLRRTGDTLYVDGEIDASNLDVFGTALRALTDTPLPIVRINLEGVTFLAA
FACENCT_F37DT1O01BD1L9FACENCTE_9493710F018678EAYRLEREGRLIMRPEEDPLGDRRGDTLARILEEEAMKSRTVWASFDWVRRVDLETALEQQKKLAEIVDARQLVVKTAALEEAIGEWTPSGLRRVHPAHAALILASEGGLSLSRATPMPL
FACENCT_F37DT1O01C0T9TFACENCTE_11168500F002628VGVLGQKVFEGRASIGYDHGYDAQKFYLRLALAPKYIEGFVEGCLERIGEDESEDEVLFRDLWEDEAERETVLMVLQAEC
FACENCT_F37DT1O01C172AFACENCTE_8559540F009290RELRQRPAQEHGLAEGGLEFVKFQEDNARAAQEFFATGVRLLQLQGRSAEFVQNWTNDAVEVVREQTEHNARTAEAFARAASRQQESFRTLTQGWVGAYQDFFSPFAFARQGVRAFQDATRQGLEATEQVARQGLRVAEETTEQGLRGRREGHPRGRSKGRRL
FACENCT_F37DT1O01C1GYCFACENCTE_2715480F008774MTDEEIKRFALVLKECERIRALMARDEAALSSGERDEIPIAAAPLDHRPPVLPRATAA
FACENCT_F37DT1O01C4P2JFACENCTE_4254990F074187MMPKFILATVALFLGREGSSGATAHDAMHARTRSRDATRRLRATRMDDPYSHLIYLGLNKRH
FACENCT_F37DT1O01C51K6FACENCTE_10147890F059551EELMGHLGEASGSIRAARRLLAEHASEDDPAHLRLLARLSEALDATEVASREARRQRGIG
FACENCT_F37DT1O01C51K6FACENCTE_10147900F018165KEGKGTVRDDQTVAEMANEVLMRQAKARADRSGEPIEEAMEAVLNTEAGKQLREFRDGPHGDEGVEEWQVGMARERARERVEQLGKHLEEPLEHPTHG
FACENCT_F37DT1O01CAAICFACENCTE_10079820F070937MPTENGRRSEAMSDKRWYAAEALQANLTNRHHHLRAASEEEAERRMRKRYPGAVAVLVLLEEPWRQSLSRSGPVRSRRHKA
FACENCT_F37DT1O01CJ6V4FACENCTE_4729010F090030AKPQGNDYRRAWFDPGRSLPDGGLTVDAGQGIAARFTWHPEYAGRLLLDVREELVRDISADQRGYALAMEAAEAREDDALATVLRLEKRWSPYDLNWAETDPGQLADRILEWEWQREQRRELFPFSEMREVSTTTDVPPAQASWLSWLRRLFGGD
FACENCT_F37DT1O01CLKE3FACENCTE_3147240F016251MVWASFDWVRQVDLETALEQQKRLAELVDTRQLVVKTAALEAALEEWTPSELRRIHPAHAAIIVASEGGLSLSRAMPMPPS
FACENCT_F37DT1O01CN7U8FACENCTE_10148220F002864RMPREVLEELEAVRLYTRTDVLDIPLLRYVAMEREKPALVVWIDKHESEYGRGLLDGFQAEE
FACENCT_F37DT1O01CP5USFACENCTE_10285860F008025MVSIGNKIKEAAMKAAKDKMSGDKKGKKRTGGSESGADKAKRAILNRLK
FACENCT_F37DT1O01CX3PAFACENCTE_2669570F004218VARTFNLDTKISPPSLLARAKKAAYENGATLLGDERSGRFSHDMAKGEYRMAGRTVVVTITEKHWLLPWPVVEARLRGLVR
FACENCT_F37DT1O01D4B7IFACENCTE_3688030F038844VASNEMPQPPYVLLFEEVVPDARPLTILVDDRGAVPLFDSEEKAGAFVASTDFGAGLEPVEVSGAGLVRALESVGDDVDYVAINPPPAGESPMKVRMGGLEELVDALQQS
FACENCT_F37DT1O01D834CFACENCTE_10961730F103859MNERQRAHITYFLGRVEYWKGRRRDYRPVSMLAARDADHAHPQHSEEKGTEVFDYLRRLKEEQAAVK
FACENCT_F37DT1O01D9FPLFACENCTE_7679080F051097STSGQDITEMPYLRHGINFMAPQTSLPAVWDSYQNVVQNLRAKGLTNGITITSYYEDRQGERYETEWTINPLLLEGSGYSDYKGYEDEVQALQDQAKAVEKISEDIRELKEATNHRHHYGQVGKRSAPSARRTGPVRRARRFL
FACENCT_F37DT1O01DCX55FACENCTE_887800F015700RAVMEAQAKSDGMRLLRAIDPTQAHGQEGTRVDPAKAAHEAGLDAGDVGSDRYHHALHYLIDEAALLGDERTAFDVGEEHPHGFCALSLHPTRGQASR
FACENCT_F37DT1O01DL36LFACENCTE_7086520F012810VNEEKGFEERRGSRPVKRSLSLGAVLLFGAGLLAGAVFGQVAVRVVLFALGAVLFAVRGYLNNGDKVATGVLVFAAAAVGIQTIVHFLGP
FACENCT_F37DT1O01DN9DAFACENCTE_1270610F072963PRTPTLPPDHPGMWRRLVARTHPDAGGDHELFIWTGALRDVVIGGELGSEIPRRPRREAPTARAGDRVPFDEDADPTVLTGRAVAMADAVAEPHGYLLRQVVDCYPSAEGPLCDQQRRGASYKSLAAIGHRVGMTKAERVQWYRIAEAVPLSQRHAGHDPEQAAEARRDSPGLCA
FACENCT_F37DT1O01DPIUHFACENCTE_4503410F008025IKEAAMRAAKEKVSGGKKGKRSGSSGSGGDMARRALKNFLK
FACENCT_F37DT1O01E3ILYFACENCTE_5093720F011188VEDALDTYNIYMDEAPSGGELDGEEGYEVEFRVVPNSTDDGNPEVDAVLAGLDLVDLINLRDSLQQEIDNFALSALETQALASGESEEAR
FACENCT_F37DT1O01EALG0FACENCTE_6567940F009290VEATANNVDKMARTAREMAEAQRDSFEAIAENFAAAQRRGMGLAEGGLEFVRMQEDNARAAQEFFAQSVKLLQLQQKNAEFVQGWTGEAVEVVREQTEHNARTAEAFAKTISSQQEGLRTLARGWTRAYTEFFSPLAYARQGMRAFQQATRQG
FACENCT_F37DT1O01EBW83FACENCTE_1654310F040839MATRSSSGGDYELSDPVGGFADVVRRVVLQPQAFFAGLPRQGSLVGPLVFALICTEVSVLLVGLLTFLDVPGGATTLVAWRDQGFLAFLGGFWWRP
FACENCT_F37DT1O01EIM6QFACENCTE_7336880F066523MPFDPELDASQPELDASQRRQVERLVRCAGKTCEVCDYEDLSCDDRAVRTMSRGISVRLFCNNRKDHADGVVGTEQPLFA
FACENCT_F37DT1O01EIUTFFACENCTE_9060800F044947MRRMVLLLTAMSAALVLASGVALAVTKIGTNGPDTLSGTNGSDTLMGKGATIRS
FACENCT_F37DT1O01EQBDJFACENCTE_1404680F042710NAWSEIIMAENSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEVLLEVHGEAKPAKPQFVPKPN
FACENCT_F37DT1O01ER82BFACENCTE_4910540F044947MRRLVLLLTAMALSVLVASGVALAVTKIGTDGDDN
FACENCT_F37DT1O01EV3WLFACENCTE_547040F016321GHGVSEAESRRAGARKRTVRWIESLWEGTNTTSREEDQKEEVLAMFRELAMESRSKGEVREYVPWQPLW
FACENCT_F37DT1O01EV3WLFACENCTE_547050F093266MGNLAVSVMQANNLVAASPEYGALAEAVAYALDLAELGVSIESGAFNLSNTPRPG
FACENCT_FWM8F5N04I11LNFACENCTE_7292920F015186VSEASVSATEAARILGVPEEEARGLADAEGWVPLETVRNRAGAAVIARELALAREEVGRLSGQLKEVRASNARLQREIKDSVEERRRLTNEVLELRAAAEERLMLMERIEHIAGIEQKLAESS
FACENCT_FWM8F5N04I5X0SFACENCTE_8834830F000756MMDRERPGATQGGPIPEAWIGQEVMIETTEVLSSDLRAGAPVYLEDVNDRGIVMMVTRHRDQNRFSRYFYPWGVVGWIRLAEDDERA
FACENCT_FWM8F5N04IIYFVFACENCTE_6138150F062389MHLAENSASNKNNKASHEFTEKSSLLLESYQKAVPKLLGKAESCLEEAIDLINLIVSASEAEGDNE
FACENCT_FWM8F5N04IWWMFFACENCTE_615630F056746GKQGLFELDNGAGATLRAHLVGYDAADLEALVRSFRGGR
FACENCT_FWM8F5N04JNF4FFACENCTE_3828500F019791MYWYNPTSRTSERVAAPSNDDEAVRMLAGHPDSARFVSEYAELRRSGAPIERAMVLVGHEERLREHEHAPVRLAWRERPRRSRPSTVGYELLVAQRL

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